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Ein zentraler Bestandteil ist das SeDOA Innovation Lab (SIL), das als Raum für das gemeinsame Erproben, Weiterentwickeln und Evaluieren innovativer Ansätze zur Förderung von Diamond Open Access dient. Zu den Kernaufgaben des SIL gehören sowohl die Beobachtung zentraler Entwicklungen im wissenschaftlichen Publikationswesen als auch die Pilotierung vielversprechender Modelle aus dem Bereich Diamond Open Access. Im Hands-on Lab erhalten die Teilnehmenden neben einem Überblick über die Aktivitäten des SIL auch eine praxisorientierte Einführung in <a href="https://nanopub.net/">Nanopublikationen</a>. In der modernen Bibliotheks- und Forschungsdatenlandschaft stellt das Kuratieren von Metadaten und Forschungsdaten einen kontinuierlichen Prozess dar, an dem zahlreiche Personen und technische Systeme beteiligt sind. Diese Kuratierungsprozesse bleiben jedoch häufig unsichtbar, was die Koordination, Nachnutzbarkeit sowie die Einschätzung von Aufwand und Nutzen erschwert. Nanopublikationen bieten hierfür einen vielversprechenden Ansatz: Sie ermöglichen es, kleinste wissenschaftliche Aussagen oder Kuratierungsereignisse als eigenständige, zitierbare und maschinenlesbare Einheiten im Linked-Open-Data-Format RDF – dem Fundament des Semantic Web – zu veröffentlichen. Nach einer kurzen Einführung in die grundlegende Struktur von Nanopublikationen (Assertion, Provenance, Publication Info) vermittelt dieses Hands-on Lab die praktischen Grundlagen ihrer Erstellung. Mithilfe von Werkzeugen wie Nanodash und Nanopub Query werden exemplarisch Kuratierungsereignisse – etwa die Korrektur eines Metadatensatzes oder die Verknüpfung von Identifikatoren – als Nanopublikationen modelliert und publiziert. Die Folien für die Session sind auf Zenodo unter der DOI <a href="https://doi.org/10.5281/zenodo.20302097">10.5281/zenodo.20302097</a> verfügbar. Bitte bringen Sie einen eigenen Laptop mit. Vorkenntnisse in Linked Data sind hilfreich, jedoch nicht zwingend erforderlich. 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http://www.nanopub.org/nschema#Nanopublication https://w3id.org/np/RAXLwwKFCEgOk_Otos4BgEkCyQ6u2OSUktU_OQRY0uJWo/assertion https://w3id.org/spaces/nanopub/nanosessions/session31 http://purl.org/dc/terms/description <div>In this session, we will take a deep dive into the core components of the nanopublication ecosystem (Registry, Query, Nanodash) and explore how they interact. Through practical examples and real-world use cases, we will illustrate how this ecosystem enables decentralized, verifiable, and reusable knowledge publishing. Links: <ul> <li><a href="https://meet.jit.si/nanosession">Video conference link</a></li> <li><a href="https://docs.google.com/document/d/1_vL-hxsHGcy85g7EIUdLesztXFofQ9QW4VdZG3K5J8g/edit#">Notes</a></li> </ul> </div> https://w3id.org/spaces/nanopub/nanosessions/session31 http://schema.org/endDate 2026-05-05T17:00:00.0+02:00 https://w3id.org/spaces/nanopub/nanosessions/session31 http://schema.org/startDate 2026-05-05T16:00:00.0+02:00 https://w3id.org/spaces/nanopub/nanosessions/session31 http://www.w3.org/1999/02/22-rdf-syntax-ns#type https://w3id.org/kpxl/gen/terms/Event https://w3id.org/spaces/nanopub/nanosessions/session31 http://www.w3.org/1999/02/22-rdf-syntax-ns#type https://w3id.org/kpxl/gen/terms/Space https://w3id.org/spaces/nanopub/nanosessions/session31 http://www.w3.org/2000/01/rdf-schema#label Nano Session #31 https://w3id.org/spaces/nanopub/nanosessions/session31 https://w3id.org/kpxl/gen/terms/hasAdmin https://orcid.org/0000-0001-8492-0354 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http://www.nanopub.org/nschema#hasAssertion https://w3id.org/np/RAuHVN25piF5glKPaICVQKj5CZLxQl0jLtvNL3TyWlXOk/assertion https://w3id.org/np/RAuHVN25piF5glKPaICVQKj5CZLxQl0jLtvNL3TyWlXOk http://www.nanopub.org/nschema#hasProvenance https://w3id.org/np/RAuHVN25piF5glKPaICVQKj5CZLxQl0jLtvNL3TyWlXOk/provenance https://w3id.org/np/RAuHVN25piF5glKPaICVQKj5CZLxQl0jLtvNL3TyWlXOk http://www.nanopub.org/nschema#hasPublicationInfo https://w3id.org/np/RAuHVN25piF5glKPaICVQKj5CZLxQl0jLtvNL3TyWlXOk/pubinfo https://w3id.org/np/RAuHVN25piF5glKPaICVQKj5CZLxQl0jLtvNL3TyWlXOk http://www.w3.org/1999/02/22-rdf-syntax-ns#type http://www.nanopub.org/nschema#Nanopublication https://w3id.org/np/RAuHVN25piF5glKPaICVQKj5CZLxQl0jLtvNL3TyWlXOk/assertion https://w3id.org/spaces/knowledgepixels/incubator/project4 http://purl.org/dc/terms/description Mass spectrometry research confronts challenges endemic to data-intensive science: vendor-specific proprietary formats from multiple Mass Spectrometry instruments, complex multi-consortium governance, and the near-impossibility of tracking provenance across thousands of heterogeneous digital objects spanning clinical samples, instrument logs, processing workflows, and publications. Traditional approaches that retrofit FAIR principles onto existing repositories fail at scale and perpetuate the research integrity and reproducibility crises. This project addresses this systemic failure by implementing nanopublication-based FAIR Digital Objects (FDOs) as minimal, but precise metadata tags at the source, combining automated and human curated machine-actionable assertions that establish unambiguous provenance chains before data enters any workflow. 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Nanoarguments builds a framework and tools for creating, browsing, and contributing to a global, federated graph of scientific discourse and evidence. Researchers and their communities can collaboratively structure claims, evidence chains, and discussion as nanopublications, which are small, cryptographically signed Linked Data snippets with precise provenance and authorship, published to a decentralized peer-to-peer network. The project builds upon the Nanodash interface to help users browse, edit, and aggregate discourse and evidence graphs, and integrates with dokieli to enable in-context authoring of nanopublications as inline annotations while reading or writing a document. A bidirectional ActivityPub connector bridges the nanopublication network and the fediverse, allowing discourse threads to start as social exchanges and crystallize into persistent, machine-readable evidence records. 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The National Catalogue is a mandatory implementation for the European Health Data Space (EHDS) in each EU-member state. The FFF provides a uniform approach for funders and research organisations aiming to collect reusable (FAIR) information for tracking research outputs and funder activities, using nanopublication-based metadata on components of the (1) funder’s grant procedures, (2) research lifecycles, and (3) tools and services used in research domains. The project aims to deliver a scalable approach for creating rich, machine-actionable information on projects, datasets and other outputs. The approach must facilitate dataset-related metadata to get exposed on the EHDS-National Catalogue. 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http://purl.org/dc/terms/description <div> Agenda: <ul> <li>Mitja Zdouc: Natural Product Research Data: from one star to five stars. <a href="https://zdouc-lab.github.io/zdouc-lab-website/">https://zdouc-lab.github.io/zdouc-lab-website/</a></li> <li>Roberto Pizzolotto: Biodiversity structured information, from species list to network through nanopublications</li> </ul> <ul> <li><a href="https://vu-live.zoom.us/j/91057846609?pwd=ON5eF2Ovs1fY8KQUCnEvSM2Eltfod1.1">Zoom link</a></li> <li><a href="https://docs.google.com/document/d/1_vL-hxsHGcy85g7EIUdLesztXFofQ9QW4VdZG3K5J8g/edit#">Notes</a></li> </ul> </div> https://w3id.org/spaces/nanopub/nanosessions/session30 http://schema.org/endDate 2026-04-14T17:00:00.0+02:00 https://w3id.org/spaces/nanopub/nanosessions/session30 http://schema.org/startDate 2026-04-14T16:00:00.0+02:00 https://w3id.org/spaces/nanopub/nanosessions/session30 http://www.w3.org/1999/02/22-rdf-syntax-ns#type https://w3id.org/kpxl/gen/terms/Event 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Session title: Making Errors and Uncertainty FAIR: A Nanopublications Hackathon for Machine-Actionable Scientific Error Reporting Session abstract: Communicating and reusing estimations of uncertainty and error is critical for interpreting scientifically relevant observations but currently hampered by poor consistency and documentation. These errors arise from diverse sources, including linguistic ambiguity, computational bugs, systematic biases, unstable measurements and missing data. Despite its central role in quality control, data integration, and decision-making, uncertainty is often underreported or informally expressed. Nanopublications offer an ideal, structured, and machine-actionable framework to address this challenge by providing a scalable solution that transcends traditional, narrative-based methods. Their design combines precise assertions with rich provenance, allowing researchers to clearly state an observation or claim (e.g., regarding an error or uncertain measurement) while simultaneously linking to its full supporting history and context. Expressed as interoperable RDF triples, nanopublications are openly published on a decentralized network as FAIR Digital Objects, making this essential information easily discoverable, integratable, and processable by automated systems across various scientific domains. The Metabolomics and Analytics Center (MAC) at Leiden Academic Center for Drug Research is developing a nanopublication-based reporting framework to capture three critical uncertainty types inherent in high-throughput mass spectrometry data: those related to detection limits/sensitivity, physical/chemical instabilities (such as evaporation or oxidation), and ambiguities from structural isomers. This hackathon will leverage the MAC's developments to explore nanopublications as a universal, scalable, and machine-actionable mechanism for communicating errors, uncertainty, and related concepts across scientific domains, using metabolomics as a core case study. Participants will be introduced to nanopublication principles and decentralized publication infrastructures through hands-on experience with user-friendly interfaces and templates. To lower barriers to participation, no technical prerequisites are assumed; participants only need to authenticate via ORCID in a browser [so come prepared with your ORCID credentials at hand!]. We'll show metabolomics examples from MAC that include uncertainty and error reporting. Participants are encouraged to bring their own examples of errors, uncertainties, and data quality issues from any scholarly domain. By the end of the hackathon, participants will have created and published nanopublications describing real error and uncertainty scenarios and gained practical experience with FAIR, machine-actionable error communication. 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Session title: Making Errors and Uncertainty FAIR: A Nanopublications Hackathon for Machine-Actionable Scientific Error Reporting Session abstract: Communicating and reusing estimations of uncertainty and error is critical for interpreting scientifically relevant observations but currently hampered by poor consistency and documentation. These errors arise from diverse sources, including linguistic ambiguity, computational bugs, systematic biases, unstable measurements and missing data. Despite its central role in quality control, data integration, and decision-making, uncertainty is often underreported or informally expressed. Nanopublications offer an ideal, structured, and machine-actionable framework to address this challenge by providing a scalable solution that transcends traditional, narrative-based methods. Their design combines precise assertions with rich provenance, allowing researchers to clearly state an observation or claim (e.g., regarding an error or uncertain measurement) while simultaneously linking to its full supporting history and context. Expressed as interoperable RDF triples, nanopublications are openly published on a decentralized network as FAIR Digital Objects, making this essential information easily discoverable, integratable, and processable by automated systems across various scientific domains. The Metabolomics and Analytics Center (MAC) at Leiden Academic Center for Drug Research is developing a nanopublication-based reporting framework to capture three critical uncertainty types inherent in high-throughput mass spectrometry data: those related to detection limits/sensitivity, physical/chemical instabilities (such as evaporation or oxidation), and ambiguities from structural isomers. This hackathon will leverage the MAC's developments to explore nanopublications as a universal, scalable, and machine-actionable mechanism for communicating errors, uncertainty, and related concepts across scientific domains, using metabolomics as a core case study. Participants will be introduced to nanopublication principles and decentralized publication infrastructures through hands-on experience with user-friendly interfaces and templates. To lower barriers to participation, no technical prerequisites are assumed; participants only need to authenticate via ORCID in a browser [so come prepared with your ORCID credentials at hand!]. We'll show metabolomics examples from MAC that include uncertainty and error reporting. Participants are encouraged to bring their own examples of errors, uncertainties, and data quality issues from any scholarly domain. 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