@prefix rdf: . @prefix rdfs: . @prefix owl: . @prefix dct: . @prefix foaf: . @prefix mac: . @prefix skos: . @prefix fair: . @prefix sio: . @prefix latest: . @prefix fip: . a owl:Class; dct:partOf ; rdfs:label "Test Biochementities Class"; rdfs:subClassOf ; skos:definition "Just for testing." . a owl:Class; dct:partOf ; rdfs:label "Test"; skos:definition "Test class in a test ontology" . a owl:Class; dct:partOf ; rdfs:label "Morphological Feature Observation"; skos:definition "A specific observation of a morphological feature in an image, linking the feature instance to its spatial location (image region with coordinates) and the taxon or organism being observed." . a owl:Class; dct:partOf ; rdfs:label "Morphological Feature"; skos:definition "A morphological feature of an organism or taxon." . mac:ComputationalMethod a owl:Class; dct:partOf mac:MAC-Ontology; rdfs:comment "A computational method, tool, or algorithm that produces predictions or scores from biological sequence or structure data. Referenced by observation FDOs of Types 3–6 via `mac:hasPredictionMethod`. Instances carry one or more `cito:citesAsAuthority` URIs identifying the published descriptions of the method."; rdfs:label "Computational Method"; rdfs:subClassOf mac:Method . mac:ComputationalPrediction a owl:Class; dct:partOf mac:MAC-Ontology; rdfs:comment "An abstract parent class for computational predictions about a Spike RBD variant, produced by a named computational method. Concrete subclasses cover specific predicted quantities (`mac:ComputationalPredictionRMSD`, `…SASA`, `…PLDDT`, `…AgMata`). Anticipates additional computational prediction types as siblings without restructuring the hierarchy. This class is abstract: all instances belong to one of its concrete subclasses."; rdfs:label "Computational Prediction"; rdfs:subClassOf mac:Observation . mac:ComputationalPredictionAgMata a owl:Class; dct:partOf mac:MAC-Ontology; rdfs:comment "A computed prediction of the aggregation propensity of a Spike RBD variant, produced by the Bio2Byte AgMata method. The score is sequence-derived and is therefore predicted once per variant rather than once per structural-prediction method."; rdfs:label "Computational Prediction AgMata"; rdfs:subClassOf mac:ComputationalPrediction . mac:ComputationalPredictionPLDDT a owl:Class; dct:partOf mac:MAC-Ontology; rdfs:comment "A computed prediction confidence score (predicted Local Distance Difference Test) for the structural prediction of a Spike RBD variant, produced by a named computational structure-prediction method."; rdfs:label "Computational Prediction pLDDT"; rdfs:subClassOf mac:ComputationalPrediction . mac:ComputationalPredictionRMSD a owl:Class; dct:partOf mac:MAC-Ontology; rdfs:comment "A computed prediction of the Root Mean Square Deviation between a predicted structure of a Spike RBD variant and a reference structure, produced by a named computational structure-prediction method."; rdfs:label "Computational Prediction RMSD"; rdfs:subClassOf mac:ComputationalPrediction . mac:ComputationalPredictionSASA a owl:Class; dct:partOf mac:MAC-Ontology; rdfs:comment "A computed prediction of the Solvent Accessible Surface Area of a Spike RBD variant's predicted structure, produced by a named computational structure-prediction method."; rdfs:label "Computational Prediction SASA"; rdfs:subClassOf mac:ComputationalPrediction . mac:ExperimentalDMSObservation a owl:Class; dct:partOf mac:MAC-Ontology; rdfs:comment "An experimental observation of binding affinity and expression level measurements for a Spike RBD variant, determined by deep mutational scanning (Bloom Lab protocol). One FDO records all six DMS metrics (`bind`, `delta_bind`, `expr`, `delta_expr`, `confidence_bind`, `confidence_expr`) for a single variant."; rdfs:label "Experimental DMS Observation"; rdfs:subClassOf mac:ExperimentalObservation . mac:ExperimentalMethod a owl:Class; dct:partOf mac:MAC-Ontology; rdfs:comment "An experimental assay or measurement protocol that produces empirical observations about biological entities. Referenced by Type 7 observation FDOs via `mac:hasExperimentalMethod`. Instances carry one or more `cito:citesAsAuthority` URIs identifying the published descriptions of the assay."; rdfs:label "Experimental Method"; rdfs:subClassOf mac:Method . mac:ExperimentalObservation a owl:Class; dct:partOf mac:MAC-Ontology; rdfs:comment "An abstract parent class for empirical observations produced by laboratory assays on a Spike RBD variant. Currently has one concrete child (`mac:ExperimentalDMSObservation`, deep mutational scanning); the forthcoming Bosch extension adds `mac:ExperimentalCellSortingObservation` as a sibling. This class is abstract: all instances belong to one of its concrete subclasses."; rdfs:label "Experimental Observation"; rdfs:subClassOf mac:Observation . mac:Method a owl:Class; dct:partOf mac:MAC-Ontology; rdfs:comment "An abstract parent class for methods, tools, assays, or surveillance platforms that produce observations within the MAC FAIR Digital Twin substrate. Concrete subclasses distinguish computational methods (`mac:ComputationalMethod`), experimental methods (`mac:ExperimentalMethod`), and observational/surveillance methods (`mac:ObservationalMethod`). Instances of any concrete subclass carry one or more `cito:citesAsAuthority` URIs identifying the published descriptions of the method. This class is abstract: all instances belong to one of its concrete subclasses."; rdfs:label "Method" . mac:Observation a owl:Class; dct:partOf mac:MAC-Ontology; rdfs:comment "An abstract parent class for all observation-layer FDOs in a MAC FAIR Digital Twin. Concrete subclasses include `mac:RealWorldOccurrence` (Type 2), `mac:ComputationalPrediction` and its sub-hierarchy (Types 3–6), `mac:ExperimentalObservation` and its sub-hierarchy (Type 7), and `mac:WHOVariantClassification` (Type 8). Every member links to the FDT's anchor (a `mac:SpikeRBDVariant`) via `mac:isObservationOf`. This class is abstract: it carries no direct instances; all instances belong to one of its concrete subclasses."; rdfs:label "Observation" . mac:ObservationalMethod a owl:Class; dct:partOf mac:MAC-Ontology; rdfs:comment "An epidemiological surveillance system or data-collection platform through which real-world occurrences of biological entities are documented. Referenced by Type 2 observation FDOs via `mac:hasSurveillanceMethod`. Instances carry one or more `cito:citesAsAuthority` URIs identifying the published descriptions of the surveillance platform."; rdfs:label "Observational Method"; rdfs:subClassOf mac:Method . mac:RealWorldOccurrence a owl:Class; dct:partOf mac:MAC-Ontology; rdfs:comment "A documented detection of a SARS-CoV-2 Spike variant in the real world, as reported in a surveillance database (typically GISAID). The occurrence is anchored to a specific collection date and to a GeoNames-identified location."; rdfs:label "Real-World Occurrence"; rdfs:subClassOf mac:Observation . mac:SpikeRBDVariant a owl:Class; dct:partOf mac:MAC-Ontology; rdfs:comment "A variant of the SARS-CoV-2 Spike receptor-binding domain (RBD, 195 residues) produced by one or more amino-acid substitutions from the wild-type Wuhan isolate (UniProt P0DTC2). This class is the type of the anchor FDO (A_r) of a FAIR Digital Twin; all observation FDOs link to it via `mac:isObservationOf` and collectively constitute the FDT."; rdfs:label "Spike RBD Variant" . mac:VOC a owl:Class; dct:partOf mac:MAC-Ontology; rdfs:comment "A SARS-CoV-2 variant designated by the WHO as carrying evidence of increased transmissibility, increased disease severity, or significant reduction in vaccine or therapeutic effectiveness."; rdfs:label "Variant of Concern"; rdfs:subClassOf mac:WHODesignation . mac:VOI a owl:Class; dct:partOf mac:MAC-Ontology; rdfs:comment "A SARS-CoV-2 variant designated by the WHO as carrying genetic markers associated with phenotypic changes and demonstrated epidemiological impact warranting enhanced monitoring."; rdfs:label "Variant of Interest"; rdfs:subClassOf mac:WHODesignation . mac:VUM a owl:Class; dct:partOf mac:MAC-Ontology; rdfs:comment "A SARS-CoV-2 variant for which the WHO has identified evidence of growth advantage or immune escape and that is being monitored precautionarily pending further characterisation."; rdfs:label "Variant Under Monitoring"; rdfs:subClassOf mac:WHODesignation . mac:WHODesignation a owl:Class; dct:partOf mac:MAC-Ontology; rdfs:comment "An abstract parent class for the World Health Organization's controlled-vocabulary risk designations applied to SARS-CoV-2 variants: Variant of Concern (`mac:VOC`), Variant of Interest (`mac:VOI`), and Variant Under Monitoring (`mac:VUM`). Used as the range of `mac:hasWHOClassification`. This class is abstract: all instances belong to one of its concrete subclasses."; rdfs:label "WHO Designation" . mac:WHOVariantClassification a owl:Class; dct:partOf mac:MAC-Ontology; rdfs:comment "A classification of a SARS-CoV-2 lineage according to the WHO risk framework (VOC / VOI / VUM), with a specified assignment date and reference URL. Time-stamped because designation status changes over time."; rdfs:label "WHO Variant Classification"; rdfs:subClassOf mac:Observation . a owl:Class; dct:partOf ; rdfs:label "Breeding time"; skos:definition "This class is used to group together different reproduction rhythms of Carabidae"; skos:relatedMatch . a owl:Class; dct:partOf ; rdfs:label "Testimonial"; skos:definition "A testimonial somebody is giving for a particular organization, product, or other entity." . a owl:Class; dct:partOf ; rdfs:label "Morphological Character"; skos:definition "A morphological character is a specific, observable physical trait or structural feature of an organism, such as shape, size, color, or internal anatomy, used in biological studies to identify, classify, or compare species."; skos:relatedMatch . a owl:Class; dct:partOf ; rdfs:label "Poster presentation"; rdfs:subClassOf ; skos:definition "The presentation of a poster, as a talk and/or at a poster stand." . a owl:Class; dct:partOf ; rdfs:label "Individual agent"; rdfs:subClassOf foaf:Agent; skos:definition "An agent that is an individual, human or artificial, and not a group of individuals." . a owl:Class; dct:partOf ; rdfs:label "Space"; rdfs:subClassOf foaf:Agent; skos:definition "Spaces are any kind of collaborative and social units, such as groups, events, or projects." . a owl:Class; dct:partOf ; rdfs:label "Chorotype"; skos:definition "This term is used to group together similar biogeographical ranges." . a owl:Class; dct:partOf ; rdfs:label "Confidence level"; skos:definition "Levels of how confident one is about the results of a study." . a owl:Class; dct:partOf ; rdfs:label "Validation status"; skos:definition "The status of validation of a concluded replication study." . a owl:Class; dct:partOf ; rdfs:label "FORRT Replication Outcome"; skos:definition "The outcome of a replication study according to the FORRT framework." . fip:Semantic-Interoperability-Profile a owl:Class, owl:DeprecatedClass; rdfs:label "Semantic Interoperability Profile"; rdfs:subClassOf fip:FAIR-Supporting-Resource; skos:definition "A Semantic Interoperability Profil (SIP) is a list of FAIR Supporting Resources chosen by a community to support semantic interoperability of (meta)data." . a owl:Class; dct:partOf ; rdfs:label "Reproduction/Replication Study"; rdfs:subClassOf ; skos:definition "A study that is both, a reproduction as well as replication study."; skos:relatedMatch , . a owl:Class; dct:partOf ; rdfs:label "Reproduction Study"; rdfs:subClassOf ; skos:definition "A study that reproduces another study with same methodology and same tools (direct reproduction)." . a owl:Class; dct:partOf ; rdfs:label "Replication Study"; rdfs:subClassOf ; skos:definition "A study that replicates another study with different methodology or conditions." . a owl:Class; dct:partOf ; rdfs:label "Morphological Feature"; rdfs:subClassOf ; skos:definition "A morphological feature of an organism or taxon." . a owl:Class; dct:partOf ; rdfs:label "Morphological Feature"; rdfs:subClassOf ; skos:definition "A morphological feature of an organism or taxon." . a owl:Class; dct:partOf ; rdfs:label "Biological Feature"; skos:definition "A feature of a biological organism or taxon." . mac:uncertainty_model a owl:Class; dct:partOf mac:MAC-Ontology; rdfs:label "Uncertainty Model"; skos:definition "Documentation of the model used to compute or estimate uncertainty." . a owl:Class; dct:partOf ; rdfs:label "FORRT Replication Study"; skos:definition "A replication study according to the FORRT framework." . a owl:Class; dct:partOf ; rdfs:label "Taskunit"; rdfs:subClassOf ; skos:definition "A time-limited collaborative unit with focus on structuring into sub-units." . a owl:Class; dct:partOf ; rdfs:label "AI as personalized learning tool"; rdfs:subClassOf ; skos:definition "Approach to use AI in education as a personalized learning tool." . a owl:Class; dct:partOf ; rdfs:label "AI in Education Approach"; skos:definition "An approach to apply AI in an education setting." . a owl:Class; dct:partOf ; rdfs:label "GenAI Agent"; rdfs:subClassOf foaf:Agent; skos:definition "An artificial agent applying GenAI." . a owl:Class; dct:partOf ; rdfs:label "GenAI Model"; skos:definition "A specific model of a GenAI system." . a owl:Class; dct:partOf ; rdfs:label "Scalability Claim"; rdfs:subClassOf ; skos:definition "A claim according to the FORRT framework about how performance changes with scale." . a owl:Class; dct:partOf ; rdfs:label "Computational Performance Claim"; rdfs:subClassOf ; skos:definition "A claim according to the FORRT framework about algorithm/method speed, runtime, and efficiency metrics." . a owl:Class; dct:partOf ; rdfs:label "Computational and Performance FORRT Claim"; rdfs:subClassOf ; skos:definition "A claim according to the FORRT framework in the category of Computational and Performance." . a owl:Class; dct:partOf ; rdfs:label "FORRT Claim"; skos:definition "A claim according to the FORRT framework." . a owl:Class; dct:partOf ; rdfs:label "PCC Context"; skos:definition "The context aspect of a review question according to the PCC framework." . a owl:Class; dct:partOf ; rdfs:label "PCC Concept"; skos:definition "The concept aspect of a review question according to the PCC framework." . a owl:Class; dct:partOf ; rdfs:label "PCC Population"; skos:definition "The population aspect of a review question according to the PCC framework." . a owl:Class; dct:partOf ; rdfs:label "PCC Review Question"; skos:definition "A review question according to the PCC (Population, Concept, Context) framework." . a owl:Class; dct:partOf ; rdfs:label "Solution Path"; skos:definition "A solution path in the context of FAIR requirements." . a owl:Class; dct:partOf ; rdfs:label "Purpose"; skos:definition "A purpose in the context of FAIR requirements." . a owl:Class; dct:partOf ; rdfs:label "Action"; skos:definition "An action in the context of FAIR requirements." . a owl:Class; dct:partOf ; rdfs:label "Role"; skos:definition "A role in the context of FAIR requirements." . a owl:Class; dct:partOf ; rdfs:label "Digital Object Analysis"; skos:definition "A digital object analysis in the context of FAIR requirement." . a owl:Class; dct:partOf ; rdfs:label "User Story"; skos:definition "A user story in the context of FAIR requirements." . a owl:Class; dct:partOf ; rdfs:label "Case Study"; skos:definition "A case study in the context of FAIR requirements." . a owl:Class; rdfs:label "GenAI+KG application"; rdfs:subClassOf ; skos:definition "A software application that involves generative AI and knowledge graphs." . a owl:Class; dct:partOf ; rdfs:label "Thanks"; skos:definition "An expression of gratitude." . a owl:Class; dct:partOf ; rdfs:label "Event"; rdfs:subClassOf ; skos:definition "A time-limited kind of collaborative unit with focus on exchange." . a owl:Class; dct:partOf ; rdfs:label "Campaign"; rdfs:subClassOf ; skos:definition "A time-limited kind of collaborative unit with focus on outreach." . a owl:Class; dct:partOf ; rdfs:label "Initiative"; rdfs:subClassOf ; skos:definition "A time-limited kind of collaborative unit with focus on coordination." . a owl:Class; dct:partOf ; rdfs:label "Project"; rdfs:subClassOf ; skos:definition "A time-limited kind of collaborative unit with focus on getting work done." . a owl:Class; dct:partOf ; rdfs:label "Taskforce"; rdfs:subClassOf ; skos:definition "A time-limited kind of collaborative unit with focus of serving as formal vessel" . a owl:Class; dct:partOf ; rdfs:label "Consortium"; rdfs:subClassOf ; skos:definition "A time-limited kind of collaborative unit with focus on bringing units together." . a owl:Class; dct:partOf ; rdfs:label "Community"; rdfs:subClassOf ; skos:definition "An open-ended kind of collaborative unit with focus on exchange." . a owl:Class; dct:partOf ; rdfs:label "Outlet"; rdfs:subClassOf ; skos:definition "An open-ended kind of collaborative unit focussed on outreach." . a owl:Class; dct:partOf ; rdfs:label "Program"; rdfs:subClassOf ; skos:definition "An open-ended kind of collaborative unit with focus on coordination." . a owl:Class; dct:partOf ; rdfs:label "Group"; rdfs:subClassOf ; skos:definition "An open-ended kind of collaborative unit with focus on getting work done." . a owl:Class; dct:partOf ; rdfs:label "Division"; rdfs:subClassOf ; skos:definition "An open-ended kind of collaborative unit with focus on structuring into sub-units." . a owl:Class; dct:partOf ; rdfs:label "Alliance"; rdfs:subClassOf ; skos:definition "An open-ended kind of collaborative unit with the focus on bringing units together." . a owl:Class; dct:partOf ; rdfs:label "Organization"; rdfs:subClassOf ; skos:definition "An open-ended kind of collaborative unit with the focus of serving as a formal vessel." . a owl:Class; rdfs:label "Test"; skos:definition "testing..." . rdf:first fair:I; rdf:rest . rdf:first fair:R; rdf:rest rdf:nil . rdf:first fair:F; rdf:rest . rdf:first fair:A; rdf:rest . fair:FAIR-Principle a owl:Class; dct:partOf fair:FAIR; rdfs:isDefinedBy ; rdfs:label "FAIR Principle"@en; rdfs:subClassOf fair:FAIR-Principle-or-SubPrinciple; owl:oneOf ; skos:definition "A FAIR principle describes an essential aspect of FAIR."@en . fair:FAIR-Principle-or-SubPrinciple a owl:Class; dct:partOf fair:FAIR; rdfs:isDefinedBy ; rdfs:label "FAIR Principle or Sub-Principle"@en; skos:definition "Either a FAIR principle or one of its sub-principles."@en . rdf:first fair:I2; rdf:rest . rdf:first fair:R1.1; rdf:rest . rdf:first fair:A2; rdf:rest . rdf:first fair:I1; rdf:rest . rdf:first fair:A1; rdf:rest . rdf:first fair:A1.1; rdf:rest . rdf:first fair:A1.2; rdf:rest . rdf:first fair:I3; rdf:rest . rdf:first fair:F1; rdf:rest . rdf:first fair:F2; rdf:rest . rdf:first fair:F3; rdf:rest . rdf:first fair:F4; rdf:rest . rdf:first fair:R1.2; rdf:rest . rdf:first fair:R1.3; rdf:rest rdf:nil . rdf:first fair:R1; rdf:rest . fair:FAIR-SubPrinciple a owl:Class; dct:partOf fair:FAIR; rdfs:isDefinedBy ; rdfs:label "FAIR SubPrinciple"@en; rdfs:subClassOf fair:FAIR-Principle-or-SubPrinciple; owl:oneOf ; skos:definition "A sub-principle of a FAIR principle."@en . fair:FAIR a owl:Class; dct:hasPart fair:A, fair:F, fair:I, fair:R; rdfs:isDefinedBy ; rdfs:label "FAIR principles"@en; rdfs:seeAlso ; rdfs:subClassOf sio:000090 . a owl:Class, owl:DeprecatedClass; dct:partOf ; rdfs:label "Part-level View Display"; rdfs:subClassOf ; skos:definition "A part-level view display shows the view on the level of the parts of a resource." . a owl:Class, owl:DeprecatedClass; dct:partOf ; rdfs:label "Top-level View Display"; rdfs:subClassOf ; skos:definition "A top-level view display shows the view on the top-level of the resource, as compared to the level of its parts." . a owl:Class; dct:partOf ; rdfs:label "Resource View"; rdfs:subClassOf ; skos:definition "A general view, based on a query template, that can be applied to different resources." . a owl:Class; dct:partOf ; rdfs:label "View Display"; rdfs:subClassOf ; skos:definition "A view display links a view to a resource for which the given view should be shown." . a owl:Class; dct:partOf ; rdfs:label "View Entity"; skos:definition "A View Entity is either a general Resource View (not applied to any specific resource) or a specific View Display (applied to specific resources)." . a owl:Class; dct:partOf ; rdfs:label "Ontology Version"; rdfs:subClassOf owl:Ontology; skos:definition "A specific version of an OWL ontology." . a owl:Class; dct:partOf ; rdfs:label "Science Live Credit"; skos:definition "The issuing of a credit in the context of the Science Live system." . a owl:Class; dct:partOf ; rdfs:label "Systematic Review Search Strategy"; skos:definition "The strategies for searching applied to a given systematic review." . a owl:Class; dct:partOf ; rdfs:label "Deactivated View Display"; rdfs:subClassOf ; skos:definition "A view display that is deactivated, meaning that it is not shown on the page." . a owl:Class; dct:partOf ; rdfs:label "Activated View Display"; rdfs:subClassOf ; skos:definition "A view display that is activated, which means that it is shown on the page" . a owl:Class; dct:partOf ; rdfs:label "View Entry Action"; rdfs:subClassOf ; skos:definition "A View Entry Action is a kind of View Action that applies to a specific entry of a view's results, as compared to an action that applies to the entire result." . a owl:Class; dct:partOf ; rdfs:label "View Result Action"; rdfs:subClassOf ; skos:definition "A View Result Action is a kind of View Action that applies to the whole result (e.g. table), as compared to an action that applies to a specific entry of a result." . a owl:Class; dct:partOf ; rdfs:label "View Action"; skos:definition "This class represents an action for a resource view. Such actions are typically shown as buttons/links to the user." . a owl:Class; dct:partOf ; rdfs:label "Data Collection"; skos:definition "A folder containing files of type datasets." . a owl:Class; dct:partOf ; rdfs:label "Sample Description"; skos:definition "A document that provides context and methodological information about the samples." . a owl:Class; dct:partOf ; rdfs:label "Cohort Description"; skos:definition "A document that provides context and methodological information about the cohort such as number of samples." . a owl:Class; dct:partOf ; rdfs:label "File Naming Information"; skos:definition "A document that provides an explanation of the naming convention used for dataset files." . fip:Authentication-and-authorization-service a owl:Class; rdfs:isDefinedBy ; rdfs:label "Authentication and authorization service"@en; rdfs:subClassOf fip:FAIR-Enabling-Resource, fip:FAIR-Supporting-Technology; skos:definition "A service that mediates access to digital objects according to specifed conditions."@en .