RArAFrdM4r

http://purl.org/np/RArAFrdM4rux7Cwl-lT_a4JzGk9tcGItbpd7ykkbD3S2M

 RArAFrdM4r label ▼ comment... approve/disapprove... edit as derived nanopublication...

https://w3id.org/biolink/vocab/FDA_adverse_event_level

FDA_adverse_event_level

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"FDA adverse event level - "

.

https://w3id.org/biolink/vocab/FDA_approval_status

FDA_approval_status

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"FDA approval status - "

.

https://w3id.org/biolink/vocab/actively_involved_in

actively_involved_in

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"actively involved in - holds between a continuant and a process or function, where the continuant actively contributes to part or all of the process or function it realizes"

.

https://w3id.org/biolink/vocab/address

address

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"address - the particulars of the place where someone or an organization is situated. For now, this slot is a simple text "blob" containing all relevant details of the given location for fitness of purpose. For the moment, this "address" can include other contact details such as email and phone number(?)."

.

https://w3id.org/biolink/vocab/adjusted_p_value

adjusted_p_value

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"adjusted p value - The adjusted p-value is the probability of obtaining test results at least as extreme as the results actually observed, under the assumption that the null hypothesis is correct, adjusted for multiple comparisons. P is always italicized and capitalized. The actual P value* should be expressed (P=. 04) rather than expressing a statement of inequality (P<. 05), unless P<."

.

https://w3id.org/biolink/vocab/affected_by

affected_by

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"affected by - describes an entity of which the state or quality is affected by another existing entity."

.

https://w3id.org/biolink/vocab/affects

affects

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"affects - describes an entity that has a direct affect on the state or quality of another existing entity. Use of the 'affects' predicate implies that the affected entity already exists, unlike predicates such as 'affects risk for' and 'prevents, where the outcome is something that may or may not come to be."

.

https://w3id.org/biolink/vocab/affects_risk_for

affects_risk_for

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"affects risk for - holds between two entities where exposure to one entity alters the chance of developing the other"

.

https://w3id.org/biolink/vocab/affiliation

affiliation

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"affiliation - a professional relationship between one provider (often a person) within another provider (often an organization). Target provider identity should be specified by a CURIE. Providers may have multiple affiliations."

.

https://w3id.org/biolink/vocab/agent_id

agent_id

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"agent id - Different classes of agents have distinct preferred identifiers. For publishers, use the ISBN publisher code. See https://grp.isbn-international.org/ for publisher code lookups. For editors, authors and individual providers, use the individual's ORCID if available; Otherwise, a ScopusID, ResearchID or Google Scholar ID ('GSID') may be used if the author ORCID is unknown. Institutional agents could be identified by an International Standard Name Identifier ('ISNI') code."

.

https://w3id.org/biolink/vocab/agent_name

agent_name

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"agent name - it is recommended that an author's 'name' property be formatted as "surname, firstname initial.""

.

https://w3id.org/biolink/vocab/aggregator_knowledge_source

aggregator_knowledge_source

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"aggregator knowledge source - An intermediate aggregator resource from which knowledge expressed in an Association was retrieved downstream of the original source, on its path to its current serialized form."

.

https://w3id.org/biolink/vocab/ameliorates

ameliorates

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"ameliorates - A relationship between an entity (e.g. a genotype, genetic variation, chemical, or environmental exposure, clinical intervention) and a condition (a phenotype or disease), where the presence of the entity reduces or eliminates some or all aspects of the condition."

.

https://w3id.org/biolink/vocab/anatomical_context_qualifier

anatomical_context_qualifier

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"anatomical context qualifier - A statement qualifier representing an anatomical location where an relationship expressed in an association took place (can be a tissue, cell type, or sub-cellular location)."

.

https://w3id.org/biolink/vocab...ical_entity_association_object

anatomical_entity_to_anatomical_entity_association_object

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"anatomical entity to anatomical entity association object - connects an association to the object of the association. For example, in a gene-to-phenotype association, the gene is subject and phenotype is object."

.

https://w3id.org/biolink/vocab...cal_entity_association_subject

anatomical_entity_to_anatomical_entity_association_subject

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"anatomical entity to anatomical entity association subject - connects an association to the subject of the association. For example, in a gene-to-phenotype association, the gene is subject and phenotype is object."

.

https://w3id.org/biolink/vocab...y_ontogenic_association_object

anatomical_entity_to_anatomical_entity_ontogenic_association_object

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"anatomical entity to anatomical entity ontogenic association object - the structure at an earlier time"

.

https://w3id.org/biolink/vocab...ntogenic_association_predicate

anatomical_entity_to_anatomical_entity_ontogenic_association_predicate

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"anatomical entity to anatomical entity ontogenic association predicate - A high-level grouping for the relationship type. AKA minimal predicate. This is analogous to category for nodes."

.

https://w3id.org/biolink/vocab..._ontogenic_association_subject

anatomical_entity_to_anatomical_entity_ontogenic_association_subject

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"anatomical entity to anatomical entity ontogenic association subject - the structure at a later time"

.

https://w3id.org/biolink/vocab...ity_part_of_association_object

anatomical_entity_to_anatomical_entity_part_of_association_object

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"anatomical entity to anatomical entity part of association object - the whole"

.

https://w3id.org/biolink/vocab..._part_of_association_predicate

anatomical_entity_to_anatomical_entity_part_of_association_predicate

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"anatomical entity to anatomical entity part of association predicate - A high-level grouping for the relationship type. AKA minimal predicate. This is analogous to category for nodes."

.

https://w3id.org/biolink/vocab...ty_part_of_association_subject

anatomical_entity_to_anatomical_entity_part_of_association_subject

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"anatomical entity to anatomical entity part of association subject - the part"

.

https://w3id.org/biolink/vocab/animal_model_available_from

animal_model_available_from

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"animal model available from - "

.

https://w3id.org/biolink/vocab/article_iso_abbreviation

article_iso_abbreviation

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"article iso abbreviation - Optional value, if used locally as a convenience, is set to the iso abbreviation of the 'published in' parent."

.

https://w3id.org/biolink/vocab/article_published_in

article_published_in

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"article published in - The enclosing parent serial containing the article should have industry-standard identifier from ISSN."

.

https://w3id.org/biolink/vocab/aspect_qualifier

aspect_qualifier

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"aspect qualifier - Composes with the core concept to describe new concepts of a different ontological type. e.g. a process in which the core concept participates, a function/activity/role held by the core concept, or a characteristic/quality that inheres in the core concept. The purpose of the aspect slot is to indicate what aspect is being affected in an 'affects' association."

.

https://w3id.org/biolink/vocab/assesses

assesses

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"assesses - The effect of a thing on a target was interrogated in some assay. A relationship between some perturbing agent (usually a chemical compound) and some target entity, where the affect of the perturbing agent on the target entity was interrogated in a particular assay. The target might be a particular protein, tissue, phenotype, whole organism, cell line, or other type of biological entity."

.

https://w3id.org/biolink/vocab/associated_environmental_context

associated_environmental_context

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"associated environmental context - An attribute that can be applied to an association where the association holds between two entities located or occurring in a particular environment. For example, two microbial taxa may interact in the context of a human gut; a disease may give rise to a particular phenotype in a particular environmental exposure. # TODO: add examples of values for this property."

.

https://w3id.org/biolink/vocab/associated_with

associated_with

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"associated with - Expresses a relationship between two named things where the relationship is typically generated statistically (though not in all cases), and is weaker than its child, 'correlated with', but stronger than its parent, 'related to'. This relationship holds between two concepts represented by variables for which a statistical dependence is demonstrated. E.g. the statement “Atrial Fibrillation (Afib) is associated with Myocardial Infarction (MI)” asserts that having Afib is not statistically independent from whether a patient will also have MI. Note that in Translator associations, the subject and object concepts may map exactly to the statistical variables, or represent related entities for which the variables serve as proxies in an Association (e.g. diseases, chemical entities or processes)."

.

https://w3id.org/biolink/vocab/associated_with_decreased_likelihood_of

associated_with_decreased_likelihood_of

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"associated with decreased likelihood of - Expresses a relationship between two named things where the relationship is typically generated statistically and the state or fact of something is less probable."

.

https://w3id.org/biolink/vocab/associated_with_increased_likelihood_of

associated_with_increased_likelihood_of

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"associated with increased likelihood of - Expresses a relationship between two named things where the relationship is typically generated statistically and the state or fact of something is more probable."

.

https://w3id.org/biolink/vocab/associated_with_likelihood_of

associated_with_likelihood_of

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"associated with likelihood of - A a relationship that holds between two concepts represented by variables for which a statistical dependence is demonstrated, wherein the state or value of one variable predicts the future state or value of the other. E.g. the statement “An Atrial Fibrillation (Afib) diagnosis is associated with likelihood of a Myocardial Infarction (MI) diagnosis” asserts that the state of having Afib is associated with an increased or decreased likelihood that a patient will later exhibit MI."

.

https://w3id.org/biolink/vocab/associated_with_resistance_to

associated_with_resistance_to

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"associated with resistance to - A relation that holds between a named thing and a chemical that specifies that the change in the named thing is found to be associated with the degree of resistance to treatment by the chemical."

.

https://w3id.org/biolink/vocab/associated_with_sensitivity_to

associated_with_sensitivity_to

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"associated with sensitivity to - A relation that holds between a named thing and a chemical that specifies that the change in the named thing is found to be associated with the degree of sensitivity to treatment by the chemical."

.

https://w3id.org/biolink/vocab/association_category

association_category

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"association category - Name of the high level ontology class in which this entity is categorized. Corresponds to the label for the biolink entity type class. * In a neo4j database this MAY correspond to the neo4j label tag. * In an RDF database it should be a biolink model class URI. This field is multi-valued. It should include values for ancestors of the biolink class; for example, a protein such as Shh would have category values `biolink:Protein`, `biolink:GeneProduct`, `biolink:MolecularEntity`, ... In an RDF database, nodes will typically have an rdf:type triples. This can be to the most specific biolink class, or potentially to a class more specific than something in biolink. For example, a sequence feature `f` may have a rdf:type assertion to a SO class such as TF_binding_site, which is more specific than anything in biolink. Here we would have categories {biolink:GenomicEntity, biolink:MolecularEntity, biolink:NamedThing}"

.

https://w3id.org/biolink/vocab/association_slot

association_slot

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"association slot - any slot that relates an association to another entity"

.

https://w3id.org/biolink/vocab/association_type

association_type

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"association type - rdf:type of biolink:Association should be fixed at rdf:Statement"

.

https://w3id.org/biolink/vocab/attribute_name

attribute_name

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"attribute name - The human-readable 'attribute name' can be set to a string which reflects its context of interpretation, e.g. SEPIO evidence/provenance/confidence annotation or it can default to the name associated with the 'has attribute type' slot ontology term."

.

https://w3id.org/biolink/vocab/author

author

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"author - an instance of one (co-)creator primarily responsible for a written work"

.

https://w3id.org/biolink/vocab/authors

authors

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"authors - connects an publication to the list of authors who contributed to the publication. This property should be a comma-delimited list of author names. It is recommended that an author's name be formatted as "surname, firstname initial.". Note that this property is a node annotation expressing the citation list of authorship which might typically otherwise be more completely documented in biolink:PublicationToProviderAssociation defined edges which point to full details about an author and possibly, some qualifiers which clarify the specific status of a given author in the publication."

.

https://w3id.org/biolink/vocab/available_from

available_from

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"available from - "

.

https://w3id.org/biolink/vocab/base_coordinate

base_coordinate

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"base coordinate - A position in the base coordinate system. Base coordinates start at position 1 instead of position 0."

.

https://w3id.org/biolink/vocab...ral_feature_association_object

behavior_to_behavioral_feature_association_object

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"behavior to behavioral feature association object - behavioral feature that is the object of the association"

.

https://w3id.org/biolink/vocab...al_feature_association_subject

behavior_to_behavioral_feature_association_subject

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"behavior to behavioral feature association subject - behavior that is the subject of the association"

.

https://w3id.org/biolink/vocab/binds

binds

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"binds - A causal mechanism mediated by the direct contact between effector and target chemical or biomolecular entity, which form a stable physical interaction."

.

https://w3id.org/biolink/vocab/biological_role_mixin

biological_role_mixin

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"biological role mixin - A role played by the chemical entity or part thereof within a biological context."

.

https://w3id.org/biolink/vocab/biomarker_for

biomarker_for

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"biomarker for - holds between a measurable chemical entity and a disease or phenotypic feature, where the entity is used as an indicator of the presence or state of the disease or feature."

.

https://w3id.org/biolink/vocab/bonferonni_adjusted_p_value

bonferonni_adjusted_p_value

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"bonferonni adjusted p value - The Bonferroni correction is an adjustment made to P values when several dependent or independent statistical tests are being performed simultaneously on a single data set. To perform a Bonferroni correction, divide the critical P value (α) by the number of comparisons being made. P is always italicized and capitalized. The actual P value* should be expressed (P=. 04) rather than expressing a statement of inequality (P<. 05), unless P<."

.

https://w3id.org/biolink/vocab/book_chapter_published_in

book_chapter_published_in

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"book chapter published in - The enclosing parent book containing the chapter should have industry-standard identifier from ISBN."

.

https://w3id.org/biolink/vocab/book_id

book_id

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"book id - Books should have industry-standard identifier such as from ISBN."

.

https://w3id.org/biolink/vocab/book_type

book_type

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"book type - Should generally be set to an ontology class defined term for 'book'."

.

https://w3id.org/biolink/vocab/broad_match

broad_match

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"broad match - a list of terms from different schemas or terminology systems that have a broader, more general meaning. Broader terms are typically shown as parents in a hierarchy or tree."

.

https://w3id.org/biolink/vocab/broad_matches

broad_matches

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"broad matches - A list of terms from different schemas or terminology systems that have a broader meaning. Such terms often describe a more general concept from different ontological perspectives."

.

https://w3id.org/biolink/vocab/capable_of

capable_of

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"capable of - holds between a physical entity and process or function, where the continuant alone has the ability to carry out the process or function."

.

https://w3id.org/biolink/vocab...tity_association_mixin_subject

case_to_entity_association_mixin_subject

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"case to entity association mixin subject - the case (e.g. patient) that has the property"

.

https://w3id.org/biolink/vocab/catalyst_qualifier

catalyst_qualifier

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"catalyst qualifier - a qualifier that connects an association between two causally connected entities (for example, two chemical entities, or a chemical entity in that changes location) and the gene product, gene, or complex that enables or catalyzes the change."

.

https://w3id.org/biolink/vocab/category

category

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"category - Name of the high level ontology class in which this entity is categorized. Corresponds to the label for the biolink entity type class. * In a neo4j database this MAY correspond to the neo4j label tag. * In an RDF database it should be a biolink model class URI. This field is multi-valued. It should include values for ancestors of the biolink class; for example, a protein such as Shh would have category values `biolink:Protein`, `biolink:GeneProduct`, `biolink:MolecularEntity`, ... In an RDF database, nodes will typically have an rdf:type triples. This can be to the most specific biolink class, or potentially to a class more specific than something in biolink. For example, a sequence feature `f` may have a rdf:type assertion to a SO class such as TF_binding_site, which is more specific than anything in biolink. Here we would have categories {biolink:GenomicEntity, biolink:MolecularEntity, biolink:NamedThing}"

.

https://w3id.org/biolink/vocab/causal_mechanism_qualifier

causal_mechanism_qualifier

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"causal mechanism qualifier - A statement qualifier representing a type of molecular control mechanism through which an effect of a chemical on a gene or gene product is mediated (e.g. 'agonism', 'inhibition', 'allosteric modulation', 'channel blocker')"

.

https://w3id.org/biolink/vocab/caused_by

caused_by

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"caused by - holds between two entities where the occurrence, existence, or activity of one is caused by the occurrence or generation of the other"

.

https://w3id.org/biolink/vocab/causes

causes

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"causes - holds between two entities where the occurrence, existence, or activity of one causes the occurrence or generation of the other"

.

https://w3id.org/biolink/vocab...of_disease_association_subject

cell_line_as_a_model_of_disease_association_subject

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"cell line as a model of disease association subject - A cell line derived from an organismal entity with a disease state that is used as a model of that disease."

.

https://w3id.org/biolink/vocab...ic_feature_association_subject

cell_line_to_disease_or_phenotypic_feature_association_subject

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"cell line to disease or phenotypic feature association subject - connects an association to the subject of the association. For example, in a gene-to-phenotype association, the gene is subject and phenotype is object."

.

https://w3id.org/biolink/vocab...tity_association_mixin_subject

cell_line_to_entity_association_mixin_subject

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"cell line to entity association mixin subject - connects an association to the subject of the association. For example, in a gene-to-phenotype association, the gene is subject and phenotype is object."

.

https://w3id.org/biolink/vocab/chapter

chapter

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"chapter - chapter of a book"

.

https://w3id.org/biolink/vocab...n_anatomical_context_qualifier

chemical_affects_gene_association_anatomical_context_qualifier

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"chemical affects gene association anatomical context qualifier - A statement qualifier representing an anatomical location where an relationship expressed in an association took place (can be a tissue, cell type, or sub-cellular location)."

.

https://w3id.org/biolink/vocab...ion_causal_mechanism_qualifier

chemical_affects_gene_association_causal_mechanism_qualifier

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"chemical affects gene association causal mechanism qualifier - A statement qualifier representing a type of molecular control mechanism through which an effect of a chemical on a gene or gene product is mediated (e.g. 'agonism', 'inhibition', 'allosteric modulation', 'channel blocker')"

.

https://w3id.org/biolink/vocab...ffects_gene_association_object

chemical_affects_gene_association_object

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"chemical affects gene association object - connects an association to the object of the association. For example, in a gene-to-phenotype association, the gene is subject and phenotype is object."

.

https://w3id.org/biolink/vocab...cts_gene_association_predicate

chemical_affects_gene_association_predicate

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"chemical affects gene association predicate - A high-level grouping for the relationship type. AKA minimal predicate. This is analogous to category for nodes."

.

https://w3id.org/biolink/vocab...ssociation_qualified_predicate

chemical_affects_gene_association_qualified_predicate

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"chemical affects gene association qualified predicate - Predicate to be used in an association when subject and object qualifiers are present and the full reading of the statement requires a qualification to the predicate in use in order to refine or increase the specificity of the full statement reading. This qualifier holds a relationship to be used instead of that expressed by the primary predicate, in a ‘full statement’ reading of the association, where qualifier-based semantics are included. This is necessary only in cases where the primary predicate does not work in a full statement reading."

.

https://w3id.org/biolink/vocab...tion_species_context_qualifier

chemical_affects_gene_association_species_context_qualifier

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"chemical affects gene association species context qualifier - A statement qualifier representing a taxonomic category of species in which a relationship expressed in an association took place."

.

https://w3id.org/biolink/vocab...fects_gene_association_subject

chemical_affects_gene_association_subject

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"chemical affects gene association subject - connects an association to the subject of the association. For example, in a gene-to-phenotype association, the gene is subject and phenotype is object."

.

https://w3id.org/biolink/vocab...named_thing_association_object

chemical_entity_assesses_named_thing_association_object

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"chemical entity assesses named thing association object - connects an association to the object of the association. For example, in a gene-to-phenotype association, the gene is subject and phenotype is object."

.

https://w3id.org/biolink/vocab...ed_thing_association_predicate

chemical_entity_assesses_named_thing_association_predicate

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"chemical entity assesses named thing association predicate - A high-level grouping for the relationship type. AKA minimal predicate. This is analogous to category for nodes."

.

https://w3id.org/biolink/vocab...amed_thing_association_subject

chemical_entity_assesses_named_thing_association_subject

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"chemical entity assesses named thing association subject - connects an association to the subject of the association. For example, in a gene-to-phenotype association, the gene is subject and phenotype is object."

.

https://w3id.org/biolink/vocab...ulates_gene_association_object

chemical_entity_or_gene_or_gene_product_regulates_gene_association_object

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"chemical entity or gene or gene product regulates gene association object - connects an association to the object of the association. For example, in a gene-to-phenotype association, the gene is subject and phenotype is object."

.

https://w3id.org/biolink/vocab...tes_gene_association_predicate

chemical_entity_or_gene_or_gene_product_regulates_gene_association_predicate

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"chemical entity or gene or gene product regulates gene association predicate - the direction is always from regulator to regulated"

.

https://w3id.org/biolink/vocab...lates_gene_association_subject

chemical_entity_or_gene_or_gene_product_regulates_gene_association_subject

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"chemical entity or gene or gene product regulates gene association subject - connects an association to the subject of the association. For example, in a gene-to-phenotype association, the gene is subject and phenotype is object."

.

https://w3id.org/biolink/vocab...tity_association_mixin_subject

chemical_entity_to_entity_association_mixin_subject

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"chemical entity to entity association mixin subject - the chemical entity that is an interactor"

.

https://w3id.org/biolink/vocab...n_anatomical_context_qualifier

chemical_gene_interaction_association_anatomical_context_qualifier

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"chemical gene interaction association anatomical context qualifier - A statement qualifier representing an anatomical location where an relationship expressed in an association took place (can be a tissue, cell type, or sub-cellular location)."

.

https://w3id.org/biolink/vocab...interaction_association_object

chemical_gene_interaction_association_object

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"chemical gene interaction association object - connects an association to the object of the association. For example, in a gene-to-phenotype association, the gene is subject and phenotype is object."

.

https://w3id.org/biolink/vocab...eraction_association_predicate

chemical_gene_interaction_association_predicate

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"chemical gene interaction association predicate - A high-level grouping for the relationship type. AKA minimal predicate. This is analogous to category for nodes."

.

https://w3id.org/biolink/vocab...nteraction_association_subject

chemical_gene_interaction_association_subject

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"chemical gene interaction association subject - connects an association to the subject of the association. For example, in a gene-to-phenotype association, the gene is subject and phenotype is object."

.

https://w3id.org/biolink/vocab..._feature_association_predicate

chemical_or_drug_or_treatment_side_effect_disease_or_phenotypic_feature_association_predicate

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"chemical or drug or treatment side effect disease or phenotypic feature association predicate - A high-level grouping for the relationship type. AKA minimal predicate. This is analogous to category for nodes."

.

https://w3id.org/biolink/vocab..._feature_association_predicate

chemical_or_drug_or_treatment_to_disease_or_phenotypic_feature_association_predicate

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"chemical or drug or treatment to disease or phenotypic feature association predicate - A high-level grouping for the relationship type. AKA minimal predicate. This is analogous to category for nodes."

.

https://w3id.org/biolink/vocab/chemical_role_mixin

chemical_role_mixin

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"chemical role mixin - A role played by the chemical entity or part thereof within a chemical context."

.

https://w3id.org/biolink/vocab/chemical_to_chemical_association_object

chemical_to_chemical_association_object

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"chemical to chemical association object - the chemical element that is the target of the statement"

.

https://w3id.org/biolink/vocab...association_catalyst_qualifier

chemical_to_chemical_derivation_association_catalyst_qualifier

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"chemical to chemical derivation association catalyst qualifier - this connects the derivation edge to the chemical entity that catalyzes the reaction that causes the subject chemical to transform into the object chemical."

.

https://w3id.org/biolink/vocab..._derivation_association_object

chemical_to_chemical_derivation_association_object

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"chemical to chemical derivation association object - the downstream chemical entity"

.

https://w3id.org/biolink/vocab...rivation_association_predicate

chemical_to_chemical_derivation_association_predicate

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"chemical to chemical derivation association predicate - A high-level grouping for the relationship type. AKA minimal predicate. This is analogous to category for nodes."

.

https://w3id.org/biolink/vocab...derivation_association_subject

chemical_to_chemical_derivation_association_subject

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"chemical to chemical derivation association subject - the upstream chemical entity"

.

https://w3id.org/biolink/vocab...pic_feature_association_object

chemical_to_disease_or_phenotypic_feature_association_object

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"chemical to disease or phenotypic feature association object - the disease or phenotype that is affected by the chemical"

.

https://w3id.org/biolink/vocab...tity_association_mixin_subject

chemical_to_entity_association_mixin_subject

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"chemical to entity association mixin subject - the chemical entity or entity that is an interactor"

.

https://w3id.org/biolink/vocab/chemical_to_pathway_association_object

chemical_to_pathway_association_object

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"chemical to pathway association object - the pathway that is affected by the chemical"

.

https://w3id.org/biolink/vocab/chemical_to_pathway_association_subject

chemical_to_pathway_association_subject

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"chemical to pathway association subject - the chemical entity that is affecting the pathway"

.

https://w3id.org/biolink/vocab/chemically_similar_to

chemically_similar_to

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"chemically similar to - holds between one small molecule entity and another that it approximates for purposes of scientific study, in virtue of its exhibiting similar features of the studied entity."

.

https://w3id.org/biolink/vocab/chi_squared_statistic

chi_squared_statistic

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"chi squared statistic - represents the chi-squared statistic computed from observations"

.

https://w3id.org/biolink/vocab/clinical_finding_has_attribute

clinical_finding_has_attribute

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"clinical finding has attribute - connects any entity to an attribute"

.

https://w3id.org/biolink/vocab/clinical_measurement_has_attribute_type

clinical_measurement_has_attribute_type

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"clinical measurement has attribute type - connects an attribute to a class that describes it"

.

https://w3id.org/biolink/vocab/clinical_modifier_qualifier

clinical_modifier_qualifier

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"clinical modifier qualifier - the method or process of administering a pharmaceutical compound to achieve a therapeutic effect in humans or animals."

.

https://w3id.org/biolink/vocab/close_match

close_match

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"close match - a list of terms from different schemas or terminology systems that have a semantically similar but not strictly equivalent, broader, or narrower meaning. Such terms often describe the same general concept from different ontological perspectives (e.g. drug as a type of chemical entity versus drug as a type of role borne by a chemical entity)."

.

https://w3id.org/biolink/vocab/coexists_with

coexists_with

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"coexists with - holds between two entities that are co-located in the same aggregate object, process, or spatio-temporal region"

.

https://w3id.org/biolink/vocab/coexpressed_with

coexpressed_with

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"coexpressed with - holds between any two genes or gene products, in which both are generally expressed within a single defined experimental context."

.

https://w3id.org/biolink/vocab/colocalizes_with

colocalizes_with

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"colocalizes with - holds between two entities that are observed to be located in the same place."

.

https://w3id.org/biolink/vocab/composed_primarily_of

composed_primarily_of

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"composed primarily of - x composed_primarily_of_y if:more than half of the mass of x is made from parts of y."

.

https://w3id.org/biolink/vocab/concept_count_object

concept_count_object

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"concept count object - The number of instances in a dataset/cohort whose records contain the concept in the object slot of an association."

.

https://w3id.org/biolink/vocab/concept_count_subject

concept_count_subject

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"concept count subject - The number of instances in a dataset/cohort whose records contain the concept in the subject slot of an association."

.

https://w3id.org/biolink/vocab/concept_pair_count

concept_pair_count

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"concept pair count - The number of instances in a dataset/cohort whose records contain both the subject and object concept of an association."

.

https://w3id.org/biolink/vocab/condition_associated_with_gene

condition_associated_with_gene

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"condition associated with gene - holds between a gene and a disease or phenotypic feature that may be influenced, contribute to, or be correlated with the gene or its alleles/products"

.

https://w3id.org/biolink/vocab/context_qualifier

context_qualifier

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"context qualifier - Restricts the setting/context/location where the core concept (or qualified core concept) resides or occurs."

.

https://w3id.org/biolink/vocab/contraindicated_for

contraindicated_for

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"contraindicated for - Holds between a drug and a disease or phenotype, such that a person with that disease should not be treated with the drug."

.

https://w3id.org/biolink/vocab/contributes_to

contributes_to

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"contributes to - holds between two entities where the occurrence, existence, or activity of one causes or contributes to the occurrence or generation of the other"

.

https://w3id.org/biolink/vocab/contributor_association_object

contributor_association_object

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"contributor association object - agent helping to realise the given entity (e.g. such as a publication)"

.

https://w3id.org/biolink/vocab/contributor_association_predicate

contributor_association_predicate

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"contributor association predicate - generally one of the predicate values 'provider', 'publisher', 'editor' or 'author'"

.

https://w3id.org/biolink/vocab/contributor_association_qualifiers

contributor_association_qualifiers

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"contributor association qualifiers - this field can be used to annotate special characteristics of an agent relationship, such as the fact that a given author agent of a publication is the 'corresponding author'"

.

https://w3id.org/biolink/vocab/contributor_association_subject

contributor_association_subject

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"contributor association subject - information content entity which an agent has helped realise"

.

https://w3id.org/biolink/vocab/correlated_with

correlated_with

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"correlated with - A relationship that holds between two concepts represented by variables for which a statistical dependence is demonstrated using a correlation analysis method."

.

https://w3id.org/biolink/vocab/creation_date

creation_date

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"creation date - date on which an entity was created. This can be applied to nodes or edges"

.

https://w3id.org/biolink/vocab/decreased_likelihood_associated_with

decreased_likelihood_associated_with

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"decreased likelihood associated with - "

.

https://w3id.org/biolink/vocab/decreases_amount_or_activity_of

decreases_amount_or_activity_of

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"decreases amount or activity of - A grouping mixin to help with searching for all the predicates that decrease the amount or activity of the object."

.

https://w3id.org/biolink/vocab/decreases_response_to

decreases_response_to

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"decreases response to - holds between two chemical entities where the action or effect of one decreases the susceptibility of a biological entity or system (e.g. an organism, cell, cellular component, macromolecular machine mixin, biological or pathological process) to the other"

.

https://w3id.org/biolink/vocab/derivative_qualifier

derivative_qualifier

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"derivative qualifier - A qualifier that composes with a core subject/object concept to describe something that is derived from the core concept. For example, the qualifier ‘metabolite’ combines with a ‘Chemical X’ core concept to express the composed concept ‘a metabolite of Chemical X’."

.

https://w3id.org/biolink/vocab/derives_from

derives_from

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"derives from - holds between two distinct material entities, the new entity and the old entity, in which the new entity begins to exist when the old entity ceases to exist, and the new entity inherits the significant portion of the matter of the old entity"

.

https://w3id.org/biolink/vocab/derives_into

derives_into

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"derives into - holds between two distinct material entities, the old entity and the new entity, in which the new entity begins to exist when the old entity ceases to exist, and the new entity inherits the significant portion of the matter of the old entity"

.

https://w3id.org/biolink/vocab/description

description

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"description - a human-readable description of an entity"

.

https://w3id.org/biolink/vocab/diagnoses

diagnoses

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"diagnoses - a relationship that identifies the nature of (an illness or other problem) by examination of the symptoms."

.

https://w3id.org/biolink/vocab/direction_qualifier

direction_qualifier

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"direction qualifier - Composes with the core concept (+ aspect if provided) to describe a change in its direction or degree."

.

https://w3id.org/biolink/vocab/directly_physically_interacts_with

directly_physically_interacts_with

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"directly physically interacts with - A causal mechanism mediated by a direct contact between the effector and target entities (this contact may be weak or strong, transient or stable)."

.

https://w3id.org/biolink/vocab/disease_has_basis_in

disease_has_basis_in

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"disease has basis in - A relation that holds between a disease and an entity where the state of the entity has contribution to the disease."

.

https://w3id.org/biolink/vocab/disease_has_location

disease_has_location

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"disease has location - A relationship between a disease and an anatomical entity where the disease has one or more features that are located in that entity."

.

https://w3id.org/biolink/vocab...tity_association_mixin_subject

disease_or_phenotypic_feature_to_entity_association_mixin_subject

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"disease or phenotypic feature to entity association mixin subject - disease or phenotype"

.

https://w3id.org/biolink/vocab...inheritance_association_object

disease_or_phenotypic_feature_to_genetic_inheritance_association_object

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"disease or phenotypic feature to genetic inheritance association object - genetic inheritance associated with the specified disease or phenotypic feature."

.

https://w3id.org/biolink/vocab...eritance_association_predicate

disease_or_phenotypic_feature_to_genetic_inheritance_association_predicate

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"disease or phenotypic feature to genetic inheritance association predicate - A high-level grouping for the relationship type. AKA minimal predicate. This is analogous to category for nodes."

.

https://w3id.org/biolink/vocab...to_location_association_object

disease_or_phenotypic_feature_to_location_association_object

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"disease or phenotypic feature to location association object - anatomical entity in which the disease or feature is found."

.

https://w3id.org/biolink/vocab...tity_association_mixin_subject

disease_to_entity_association_mixin_subject

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"disease to entity association mixin subject - disease class"

.

https://w3id.org/biolink/vocab...pic_feature_association_object

disease_to_phenotypic_feature_association_object

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"disease to phenotypic feature association object - connects an association to the object of the association. For example, in a gene-to-phenotype association, the gene is subject and phenotype is object."

.

https://w3id.org/biolink/vocab...ic_feature_association_subject

disease_to_phenotypic_feature_association_subject

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"disease to phenotypic feature association subject - connects an association to the subject of the association. For example, in a gene-to-phenotype association, the gene is subject and phenotype is object."

.

https://w3id.org/biolink/vocab/disrupted_by

disrupted_by

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"disrupted by - describes a relationship where the structure, function, or occurrence of one entity is degraded or interfered with by another."

.

https://w3id.org/biolink/vocab/disrupts

disrupts

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"disrupts - describes a relationship where one entity degrades or interferes with the structure, function, or occurrence of another."

.

https://w3id.org/biolink/vocab/drug_regulatory_status_world_wide

drug_regulatory_status_world_wide

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"drug regulatory status world wide - An agglomeration of drug regulatory status worldwide. Not specific to FDA."

.

https://w3id.org/biolink/vocab...tity_association_mixin_subject

drug_to_entity_association_mixin_subject

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"drug to entity association mixin subject - the drug that is an interactor"

.

https://w3id.org/biolink/vocab/drug_to_gene_association_object

drug_to_gene_association_object

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"drug to gene association object - the gene or gene product that is affected by the drug"

.

https://w3id.org/biolink/vocab...sease_association_has_evidence

druggable_gene_to_disease_association_has_evidence

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"druggable gene to disease association has evidence - connects an association to an instance of supporting evidence"

.

https://w3id.org/biolink/vocab..._disease_association_predicate

druggable_gene_to_disease_association_predicate

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"druggable gene to disease association predicate - A high-level grouping for the relationship type. AKA minimal predicate. This is analogous to category for nodes."

.

https://w3id.org/biolink/vocab...to_disease_association_subject

druggable_gene_to_disease_association_subject

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"druggable gene to disease association subject - gene in which variation is correlated with the disease in a protective manner, or if the product produced by the gene can be targeted by a small molecule and this leads to a protective or improving disease state."

.

https://w3id.org/biolink/vocab/editor

editor

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"editor - editor of a compiled work such as a book or a periodical (newspaper or an academic journal). Note that in the case of publications which have a containing "published in" node property, the editor association may not be attached directly to the embedded child publication, but only made in between the parent's publication node and the editorial agent of the encompassing publication (e.g. only from the Book referenced by the 'published_in' property of a book chapter Publication node)."

.

https://w3id.org/biolink/vocab/enabled_by

enabled_by

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"enabled by - holds between a process and a physical entity, where the physical entity executes the process"

.

https://w3id.org/biolink/vocab/enables

enables

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"enables - holds between a physical entity and a process, where the physical entity executes the process"

.

https://w3id.org/biolink/vocab/end_coordinate

end_coordinate

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"end coordinate - The position at which the subject genomic entity ends on the chromosome or other entity to which it is located on."

.

https://w3id.org/biolink/vocab/end_interbase_coordinate

end_interbase_coordinate

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"end interbase coordinate - The position at which the subject nucleic acid entity ends on the chromosome or other entity to which it is located on."

.

https://w3id.org/biolink/vocab...sease_association_mixin_object

entity_to_disease_association_mixin_object

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"entity to disease association mixin object - disease"

.

https://w3id.org/biolink/vocab...ature_association_mixin_object

entity_to_disease_or_phenotypic_feature_association_mixin_object

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"entity to disease or phenotypic feature association mixin object - disease or phenotype"

.

https://w3id.org/biolink/vocab...event_association_mixin_object

entity_to_exposure_event_association_mixin_object

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"entity to exposure event association mixin object - connects an association to the object of the association. For example, in a gene-to-phenotype association, the gene is subject and phenotype is object."

.

https://w3id.org/biolink/vocab...tcome_association_mixin_object

entity_to_outcome_association_mixin_object

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"entity to outcome association mixin object - connects an association to the object of the association. For example, in a gene-to-phenotype association, the gene is subject and phenotype is object."

.

https://w3id.org/biolink/vocab...ature_association_mixin_object

entity_to_phenotypic_feature_association_mixin_object

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"entity to phenotypic feature association mixin object - connects an association to the object of the association. For example, in a gene-to-phenotype association, the gene is subject and phenotype is object."

.

https://w3id.org/biolink/vocab/evidence_count

evidence_count

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"evidence count - The number of evidence instances that are connected to an association."

.

https://w3id.org/biolink/vocab/exacerbates

exacerbates

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"exacerbates - A relationship between an entity (e.g. a chemical, environmental exposure, or some form of genetic variation) and a condition (a phenotype or disease), where the presence of the entity worsens some or all aspects of the condition."

.

https://w3id.org/biolink/vocab/exact_match

exact_match

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"exact match - holds between two entities that have strictly equivalent meanings, with a high degree of confidence"

.

https://w3id.org/biolink/vocab/exact_matches

exact_matches

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"exact matches - A list of terms from different schemas or terminology systems that have an identical meaning. Such terms often describe the same concept from different ontological perspectives."

.

https://w3id.org/biolink/vocab/exon_to_transcript_relationship_object

exon_to_transcript_relationship_object

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"exon to transcript relationship object - connects an association to the object of the association. For example, in a gene-to-phenotype association, the gene is subject and phenotype is object."

.

https://w3id.org/biolink/vocab/exon_to_transcript_relationship_subject

exon_to_transcript_relationship_subject

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"exon to transcript relationship subject - connects an association to the subject of the association. For example, in a gene-to-phenotype association, the gene is subject and phenotype is object."

.

https://w3id.org/biolink/vocab/expected_count

expected_count

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"expected count - The expected (calculated) number of instances in a dataset/cohort whose records contain both the subject and object concept of an association if the subject and object concepts are independent."

.

https://w3id.org/biolink/vocab...ic_feature_association_subject

exposure_event_to_phenotypic_feature_association_subject

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"exposure event to phenotypic feature association subject - connects an association to the subject of the association. For example, in a gene-to-phenotype association, the gene is subject and phenotype is object."

.

https://w3id.org/biolink/vocab/expressed_in

expressed_in

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"expressed in - holds between a gene or gene product and an anatomical entity in which it is expressed"

.

https://w3id.org/biolink/vocab/expresses

expresses

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"expresses - holds between an anatomical entity and gene or gene product that is expressed there"

.

https://w3id.org/biolink/vocab/expression_site

expression_site

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"expression site - location in which gene or protein expression takes place. May be cell, tissue, or organ."

.

https://w3id.org/biolink/vocab/extraction_confidence_score

extraction_confidence_score

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"extraction confidence score - A quantitative confidence value that represents the probability of obtaining a result at least as extreme as that actually obtained, assuming that the actual value was the result of chance alone."

.

https://w3id.org/biolink/vocab/food_component_of

food_component_of

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"food component of - holds between a one or more chemical entities present in food, irrespective of nutritional value (i.e. could also be a contaminant or additive)"

.

https://w3id.org/biolink/vocab/form_or_variant_qualifier

form_or_variant_qualifier

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"form or variant qualifier - A qualifier that composes with a core subject/object concept to define a specific type, variant, alternative version of this concept. The composed concept remains a subtype or instance of the core concept. For example, the qualifier ‘mutation’ combines with the core concept ‘Gene X’ to express the compose concept ‘a mutation of Gene X’."

.

https://w3id.org/biolink/vocab/frequency_qualifier

frequency_qualifier

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"frequency qualifier - a qualifier used in a phenotypic association to state how frequent the phenotype is observed in the subject"

.

https://w3id.org/biolink/vocab/full_name

full_name

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"full name - a long-form human readable name for a thing"

.

https://w3id.org/biolink/vocab/functional_association_object

functional_association_object

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"functional association object - class describing the activity, process or localization of the gene product"

.

https://w3id.org/biolink/vocab/functional_association_subject

functional_association_subject

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"functional association subject - gene, product or macromolecular complex that has the function associated with the GO term"

.

https://w3id.org/biolink/vocab...of_disease_association_subject

gene_as_a_model_of_disease_association_subject

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"gene as a model of disease association subject - A gene that has a role in modeling the disease. This may be a model organism ortholog of a known disease gene, or it may be a gene whose mutants recapitulate core features of the disease."

.

https://w3id.org/biolink/vocab/gene_associated_with_condition

gene_associated_with_condition

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"gene associated with condition - holds between a gene and a disease or phenotypic feature that the gene or its alleles/products may influence, contribute to, or correlate with"

.

https://w3id.org/biolink/vocab...ion_mixin_quantifier_qualifier

gene_expression_mixin_quantifier_qualifier

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"gene expression mixin quantifier qualifier - Optional quantitative value indicating degree of expression."

.

https://w3id.org/biolink/vocab/gene_fusion_with

gene_fusion_with

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"gene fusion with - holds between two independent genes that have fused through translocation, interstitial deletion, or chromosomal inversion to form a new, hybrid gene. Fusion genes are often implicated in various neoplasms and cancers."

.

https://w3id.org/biolink/vocab..._to_disease_association_object

gene_has_variant_that_contributes_to_disease_association_object

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"gene has variant that contributes to disease association object - connects an association to the object of the association. For example, in a gene-to-phenotype association, the gene is subject and phenotype is object."

.

https://w3id.org/biolink/vocab..._disease_association_predicate

gene_has_variant_that_contributes_to_disease_association_predicate

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"gene has variant that contributes to disease association predicate - A high-level grouping for the relationship type. AKA minimal predicate. This is analogous to category for nodes."

.

https://w3id.org/biolink/vocab...to_disease_association_subject

gene_has_variant_that_contributes_to_disease_association_subject

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"gene has variant that contributes to disease association subject - A gene that has a role in modeling the disease. This may be a model organism ortholog of a known disease gene, or it may be a gene whose mutants recapitulate core features of the disease."

.

https://w3id.org/biolink/vocab/gene_product_of

gene_product_of

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"gene product of - definition x has gene product of y if and only if y is a gene (SO:0000704) that participates in some gene expression process (GO:0010467) where the output of thatf process is either y or something that is ribosomally translated from x"

.

https://w3id.org/biolink/vocab/gene_to_disease_association_object

gene_to_disease_association_object

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"gene to disease association object - connects an association to the object of the association. For example, in a gene-to-phenotype association, the gene is subject and phenotype is object."

.

https://w3id.org/biolink/vocab/gene_to_disease_association_subject

gene_to_disease_association_subject

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"gene to disease association subject - gene in which variation is correlated with the disease, may be protective or causative or associative, or as a model"

.

https://w3id.org/biolink/vocab...tity_association_mixin_subject

gene_to_entity_association_mixin_subject

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"gene to entity association mixin subject - gene that is the subject of the association"

.

https://w3id.org/biolink/vocab...ession_site_association_object

gene_to_expression_site_association_object

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"gene to expression site association object - location in which the gene is expressed"

.

https://w3id.org/biolink/vocab...ion_site_association_predicate

gene_to_expression_site_association_predicate

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"gene to expression site association predicate - expression relationship"

.

https://w3id.org/biolink/vocab...sociation_quantifier_qualifier

gene_to_expression_site_association_quantifier_qualifier

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"gene to expression site association quantifier qualifier - can be used to indicate magnitude, or also ranking"

.

https://w3id.org/biolink/vocab...te_association_stage_qualifier

gene_to_expression_site_association_stage_qualifier

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"gene to expression site association stage qualifier - stage at which the gene is expressed in the site"

.

https://w3id.org/biolink/vocab...ssion_site_association_subject

gene_to_expression_site_association_subject

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"gene to expression site association subject - Gene or gene product positively within the specified anatomical entity (or subclass, i.e. cellular component) location."

.

https://w3id.org/biolink/vocab/gene_to_gene_association_object

gene_to_gene_association_object

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"gene to gene association object - the object gene in the association. If the relation is symmetric, subject vs object is arbitrary. We allow a gene product to stand as a proxy for the gene or vice versa."

.

https://w3id.org/biolink/vocab/gene_to_gene_association_subject

gene_to_gene_association_subject

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"gene to gene association subject - the subject gene in the association. If the relation is symmetric, subject vs object is arbitrary. We allow a gene product to stand as a proxy for the gene or vice versa."

.

https://w3id.org/biolink/vocab...pression_association_predicate

gene_to_gene_coexpression_association_predicate

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"gene to gene coexpression association predicate - A high-level grouping for the relationship type. AKA minimal predicate. This is analogous to category for nodes."

.

https://w3id.org/biolink/vocab/gene_to_gene_family_association_object

gene_to_gene_family_association_object

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"gene to gene family association object - connects an association to the object of the association. For example, in a gene-to-phenotype association, the gene is subject and phenotype is object."

.

https://w3id.org/biolink/vocab...e_family_association_predicate

gene_to_gene_family_association_predicate

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"gene to gene family association predicate - membership of the gene in the given gene family."

.

https://w3id.org/biolink/vocab/gene_to_gene_family_association_subject

gene_to_gene_family_association_subject

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"gene to gene family association subject - connects an association to the subject of the association. For example, in a gene-to-phenotype association, the gene is subject and phenotype is object."

.

https://w3id.org/biolink/vocab...ne_homology_association_object

gene_to_gene_homology_association_object

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"gene to gene homology association object - connects an association to the object of the association. For example, in a gene-to-phenotype association, the gene is subject and phenotype is object."

.

https://w3id.org/biolink/vocab...homology_association_predicate

gene_to_gene_homology_association_predicate

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"gene to gene homology association predicate - homology relationship type"

.

https://w3id.org/biolink/vocab...e_homology_association_subject

gene_to_gene_homology_association_subject

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"gene to gene homology association subject - connects an association to the subject of the association. For example, in a gene-to-phenotype association, the gene is subject and phenotype is object."

.

https://w3id.org/biolink/vocab...ne_product_relationship_object

gene_to_gene_product_relationship_object

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"gene to gene product relationship object - connects an association to the object of the association. For example, in a gene-to-phenotype association, the gene is subject and phenotype is object."

.

https://w3id.org/biolink/vocab...product_relationship_predicate

gene_to_gene_product_relationship_predicate

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"gene to gene product relationship predicate - A high-level grouping for the relationship type. AKA minimal predicate. This is analogous to category for nodes."

.

https://w3id.org/biolink/vocab...e_product_relationship_subject

gene_to_gene_product_relationship_subject

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"gene to gene product relationship subject - connects an association to the subject of the association. For example, in a gene-to-phenotype association, the gene is subject and phenotype is object."

.

https://w3id.org/biolink/vocab/gene_to_go_term_association_object

gene_to_go_term_association_object

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"gene to go term association object - class describing the activity, process or localization of the gene product"

.

https://w3id.org/biolink/vocab/gene_to_go_term_association_subject

gene_to_go_term_association_subject

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"gene to go term association subject - gene, product or macromolecular complex that has the function associated with the GO term"

.

https://w3id.org/biolink/vocab/gene_to_pathway_association_object

gene_to_pathway_association_object

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"gene to pathway association object - the pathway that includes or is affected by the gene or gene product"

.

https://w3id.org/biolink/vocab/gene_to_pathway_association_subject

gene_to_pathway_association_subject

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"gene to pathway association subject - the gene or gene product entity that participates or influences the pathway"

.

https://w3id.org/biolink/vocab...pic_feature_association_object

gene_to_phenotypic_feature_association_object

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"gene to phenotypic feature association object - connects an association to the object of the association. For example, in a gene-to-phenotype association, the gene is subject and phenotype is object."

.

https://w3id.org/biolink/vocab...ic_feature_association_subject

gene_to_phenotypic_feature_association_subject

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"gene to phenotypic feature association subject - gene in which variation is correlated with the phenotypic feature"

.

https://w3id.org/biolink/vocab/genetic_association

genetic_association

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"genetic association - Co-occurrence of a certain allele of a genetic marker and the phenotype of interest in the same individuals at above-chance level"

.

https://w3id.org/biolink/vocab/genetic_neighborhood_of

genetic_neighborhood_of

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"genetic neighborhood of - holds between two genes located nearby one another on a chromosome. "

.

https://w3id.org/biolink/vocab/genetically_interacts_with

genetically_interacts_with

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"genetically interacts with - holds between two genes whose phenotypic effects are dependent on each other in some way - such that their combined phenotypic effects are the result of some interaction between the activity of their gene products. Examples include epistasis and synthetic lethality."

.

https://w3id.org/biolink/vocab/genome_build

genome_build

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"genome build - The version of the genome on which a feature is located. For example, GRCh38 for Homo sapiens."

.

https://w3id.org/biolink/vocab/genomic_sequence_localization_object

genomic_sequence_localization_object

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"genomic sequence localization object - connects an association to the object of the association. For example, in a gene-to-phenotype association, the gene is subject and phenotype is object."

.

https://w3id.org/biolink/vocab/genomic_sequence_localization_predicate

genomic_sequence_localization_predicate

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"genomic sequence localization predicate - A high-level grouping for the relationship type. AKA minimal predicate. This is analogous to category for nodes."

.

https://w3id.org/biolink/vocab/genomic_sequence_localization_subject

genomic_sequence_localization_subject

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"genomic sequence localization subject - connects an association to the subject of the association. For example, in a gene-to-phenotype association, the gene is subject and phenotype is object."

.

https://w3id.org/biolink/vocab...of_disease_association_subject

genotype_as_a_model_of_disease_association_subject

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"genotype as a model of disease association subject - A genotype that has a role in modeling the disease."

.

https://w3id.org/biolink/vocab/genotype_to_disease_association_object

genotype_to_disease_association_object

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"genotype to disease association object - a disease that is associated with that genotype"

.

https://w3id.org/biolink/vocab..._disease_association_predicate

genotype_to_disease_association_predicate

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"genotype to disease association predicate - E.g. is pathogenic for"

.

https://w3id.org/biolink/vocab/genotype_to_disease_association_subject

genotype_to_disease_association_subject

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"genotype to disease association subject - a genotype that is associated in some way with a disease state"

.

https://w3id.org/biolink/vocab...tity_association_mixin_subject

genotype_to_entity_association_mixin_subject

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"genotype to entity association mixin subject - genotype that is the subject of the association"

.

https://w3id.org/biolink/vocab/genotype_to_gene_association_object

genotype_to_gene_association_object

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"genotype to gene association object - gene implicated in genotype"

.

https://w3id.org/biolink/vocab/genotype_to_gene_association_predicate

genotype_to_gene_association_predicate

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"genotype to gene association predicate - the relationship type used to connect genotype to gene"

.

https://w3id.org/biolink/vocab/genotype_to_gene_association_subject

genotype_to_gene_association_subject

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"genotype to gene association subject - parent genotype"

.

https://w3id.org/biolink/vocab...notype_part_association_object

genotype_to_genotype_part_association_object

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"genotype to genotype part association object - child genotype"

.

https://w3id.org/biolink/vocab...ype_part_association_predicate

genotype_to_genotype_part_association_predicate

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"genotype to genotype part association predicate - A high-level grouping for the relationship type. AKA minimal predicate. This is analogous to category for nodes."

.

https://w3id.org/biolink/vocab...otype_part_association_subject

genotype_to_genotype_part_association_subject

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"genotype to genotype part association subject - parent genotype"

.

https://w3id.org/biolink/vocab..._feature_association_predicate

genotype_to_phenotypic_feature_association_predicate

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"genotype to phenotypic feature association predicate - A high-level grouping for the relationship type. AKA minimal predicate. This is analogous to category for nodes."

.

https://w3id.org/biolink/vocab...ic_feature_association_subject

genotype_to_phenotypic_feature_association_subject

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"genotype to phenotypic feature association subject - genotype that is associated with the phenotypic feature"

.

https://w3id.org/biolink/vocab/genotype_to_variant_association_object

genotype_to_variant_association_object

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"genotype to variant association object - gene implicated in genotype"

.

https://w3id.org/biolink/vocab..._variant_association_predicate

genotype_to_variant_association_predicate

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"genotype to variant association predicate - the relationship type used to connect genotype to gene"

.

https://w3id.org/biolink/vocab/genotype_to_variant_association_subject

genotype_to_variant_association_subject

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"genotype to variant association subject - parent genotype"

.

https://w3id.org/biolink/vocab/has_active_ingredient

has_active_ingredient

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"has active ingredient - holds between a drug and a molecular entity in which the latter is a part of the former, and is a biologically active component"

.

https://w3id.org/biolink/vocab/has_adverse_event

has_adverse_event

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"has adverse event - An untoward medical occurrence in a patient or clinical investigation subject that happens during treatment with a therapeutic agent. Adverse events may be caused by something other than the drug or therapy being given and may include abnormal laboratory finding, symptoms, or diseases temporally associated with the treatment, whether or not considered related to the treatment. Adverse events are unintended effects that occur when a medication is administered correctly."

.

https://w3id.org/biolink/vocab/has_attribute

has_attribute

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"has attribute - connects any entity to an attribute"

.

https://w3id.org/biolink/vocab/has_attribute_type

has_attribute_type

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"has attribute type - connects an attribute to a class that describes it"

.

https://w3id.org/biolink/vocab/has_biological_sequence

has_biological_sequence

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"has biological sequence - connects a genomic feature to its sequence"

.

https://w3id.org/biolink/vocab/has_biomarker

has_biomarker

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"has biomarker - holds between a disease or phenotypic feature and a measurable chemical entity that is used as an indicator of the presence or state of the disease or feature. # metabolite"

.

https://w3id.org/biolink/vocab/has_chemical_formula

has_chemical_formula

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"has chemical formula - description of chemical compound based on element symbols"

.

https://w3id.org/biolink/vocab/has_chemical_role

has_chemical_role

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"has chemical role - A role is particular behaviour which a chemical entity may exhibit."

.

https://w3id.org/biolink/vocab/has_completed

has_completed

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"has completed - holds between an entity and a process that the entity is capable of and has completed"

.

https://w3id.org/biolink/vocab/has_confidence_level

has_confidence_level

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"has confidence level - connects an association to a qualitative term denoting the level of confidence"

.

https://w3id.org/biolink/vocab/has_constituent

has_constituent

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"has constituent - one or more molecular entities within a chemical mixture"

.

https://w3id.org/biolink/vocab/has_count

has_count

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"has count - number of things with a particular property"

.

https://w3id.org/biolink/vocab/has_device

has_device

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"has device - connects an entity to one or more (medical) devices"

.

https://w3id.org/biolink/vocab/has_drug

has_drug

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"has drug - connects an entity to one or more drugs"

.

https://w3id.org/biolink/vocab/has_evidence

has_evidence

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"has evidence - connects an association to an instance of supporting evidence"

.

https://w3id.org/biolink/vocab/has_excipient

has_excipient

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"has excipient - holds between a drug and a molecular entities in which the latter is a part of the former, and is a biologically inactive component"

.

https://w3id.org/biolink/vocab/has_food_component

has_food_component

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"has food component - holds between food and one or more chemical entities composing it, irrespective of nutritional value (i.e. could also be a contaminant or additive)"

.

https://w3id.org/biolink/vocab/has_gene

has_gene

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"has gene - connects an entity associated with one or more genes"

.

https://w3id.org/biolink/vocab/has_gene_or_gene_product

has_gene_or_gene_product

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"has gene or gene product - connects an entity with one or more gene or gene products"

.

https://w3id.org/biolink/vocab/has_gene_product

has_gene_product

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"has gene product - holds between a gene and a transcribed and/or translated product generated from it"

.

https://w3id.org/biolink/vocab/has_input

has_input

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"has input - holds between a process and a continuant, where the continuant is an input into the process"

.

https://w3id.org/biolink/vocab/has_member

has_member

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"has member - Defines a mereological relation between a collection and an item."

.

https://w3id.org/biolink/vocab/has_metabolite

has_metabolite

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"has metabolite - holds between two molecular entities in which the second one is derived from the first one as a product of metabolism"

.

https://w3id.org/biolink/vocab/has_mode_of_inheritance

has_mode_of_inheritance

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"has mode of inheritance - Relates a disease or phenotypic feature to its observed genetic segregation and assumed associated underlying DNA manifestation (i.e. autosomal, sex or mitochondrial chromosome)."

.

https://w3id.org/biolink/vocab/has_molecular_consequence

has_molecular_consequence

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"has molecular consequence - connects a sequence variant to a class describing the molecular consequence. E.g. SO:0001583"

.

https://w3id.org/biolink/vocab/has_not_completed

has_not_completed

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"has not completed - holds between an entity and a process that the entity is capable of, but has not completed"

.

https://w3id.org/biolink/vocab/has_numeric_value

has_numeric_value

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"has numeric value - connects a quantity value to a number"

.

https://w3id.org/biolink/vocab/has_nutrient

has_nutrient

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"has nutrient - one or more nutrients which are growth factors for a living organism"

.

https://w3id.org/biolink/vocab/has_output

has_output

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"has output - holds between a process and a continuant, where the continuant is an output of the process"

.

https://w3id.org/biolink/vocab/has_part

has_part

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"has part - holds between wholes and their parts (material entities or processes)"

.

https://w3id.org/biolink/vocab/has_participant

has_participant

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"has participant - holds between a process and a continuant, where the continuant is somehow involved in the process"

.

https://w3id.org/biolink/vocab/has_percentage

has_percentage

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"has percentage - equivalent to has quotient multiplied by 100"

.

https://w3id.org/biolink/vocab/has_phenotype

has_phenotype

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"has phenotype - holds between a biological entity and a phenotype, where a phenotype is construed broadly as any kind of quality of an organism part, a collection of these qualities, or a change in quality or qualities (e.g. abnormally increased temperature). In SNOMEDCT, disorders with keyword 'characterized by' should translate into this predicate."

.

https://w3id.org/biolink/vocab/has_plasma_membrane_part

has_plasma_membrane_part

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"has plasma membrane part - Holds between a cell c and a protein complex or protein p if and only if that cell has as part a plasma_membrane[GO:0005886], and that plasma membrane has p as part."

.

https://w3id.org/biolink/vocab/has_procedure

has_procedure

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"has procedure - connects an entity to one or more (medical) procedures"

.

https://w3id.org/biolink/vocab/has_qualitative_value

has_qualitative_value

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"has qualitative value - connects an attribute to a value"

.

https://w3id.org/biolink/vocab/has_quantitative_value

has_quantitative_value

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"has quantitative value - connects an attribute to a value"

.

https://w3id.org/biolink/vocab/has_receptor

has_receptor

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"has receptor - the organism or organism part being exposed"

.

https://w3id.org/biolink/vocab/has_route

has_route

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"has route - the process that results in the stressor coming into direct contact with the receptor"

.

https://w3id.org/biolink/vocab/has_sequence_location

has_sequence_location

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"has sequence location - holds between two nucleic acid entities when the subject can be localized in sequence coordinates on the object. For example, between an exon and a chromosome/contig."

.

https://w3id.org/biolink/vocab/has_side_effect

has_side_effect

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"has side effect - An unintended, but predictable, secondary effect shown to be correlated with a therapeutic agent, drug or treatment. Side effects happen at normal, recommended doses or treatments, and are unrelated to the intended purpose of the medication."

.

https://w3id.org/biolink/vocab/has_stressor

has_stressor

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"has stressor - the process or entity that the receptor is being exposed to"

.

https://w3id.org/biolink/vocab/has_supporting_study_result

has_supporting_study_result

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"has supporting study result - connects an association to an instance of supporting study result"

.

https://w3id.org/biolink/vocab/has_topic

has_topic

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"has topic - Connects a node to a vocabulary term or ontology class that describes some aspect of the entity. In general specific characterization is preferred. See https://github.com/biolink/biolink-model/issues/238"

.

https://w3id.org/biolink/vocab/has_total

has_total

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"has total - total number of things in a particular reference set"

.

https://w3id.org/biolink/vocab/has_unit

has_unit

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"has unit - connects a quantity value to a unit"

.

https://w3id.org/biolink/vocab/has_variant_part

has_variant_part

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"has variant part - holds between a nucleic acid entity and a nucleic acid entity that is a sub-component of it"

.

https://w3id.org/biolink/vocab/highest_FDA_approval_status

highest_FDA_approval_status

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"highest FDA approval status - Should be the highest level of FDA approval this chemical entity or device has, regardless of which disease, condition or phenotype it is currently being reviewed to treat. For specific levels of FDA approval for a specific condition, disease, phenotype, etc., see the association slot, 'FDA approval status.'"

.

https://w3id.org/biolink/vocab/homologous_to

homologous_to

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"homologous to - holds between two biological entities that have common evolutionary origin"

.

https://w3id.org/biolink/vocab/id

id

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"id - A unique identifier for an entity. Must be either a CURIE shorthand for a URI or a complete URI"

.

https://w3id.org/biolink/vocab/in_cell_population_with

in_cell_population_with

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"in cell population with - holds between two genes or gene products that are expressed in the same cell type or population"

.

https://w3id.org/biolink/vocab/in_complex_with

in_complex_with

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"in complex with - holds between two genes or gene products that are part of (or code for products that are part of) in the same macromolecular complex"

.

https://w3id.org/biolink/vocab/in_linkage_disequilibrium_with

in_linkage_disequilibrium_with

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"in linkage disequilibrium with - holds between two sequence variants, the presence of which are correlated in a population"

.

https://w3id.org/biolink/vocab/in_pathway_with

in_pathway_with

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"in pathway with - holds between two genes or gene products that are part of in the same biological pathway"

.

https://w3id.org/biolink/vocab/in_taxon

in_taxon

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"in taxon - connects an entity to its taxonomic classification. Only certain kinds of entities can be taxonomically classified; see 'thing with taxon'"

.

https://w3id.org/biolink/vocab/increased_likelihood_associated_with

increased_likelihood_associated_with

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"increased likelihood associated with - "

.

https://w3id.org/biolink/vocab/increases_amount_or_activity_of

increases_amount_or_activity_of

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"increases amount or activity of - A grouping mixin to help with searching for all the predicates that increase the amount or activity of the object."

.

https://w3id.org/biolink/vocab/increases_response_to

increases_response_to

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"increases response to - holds between two chemical entities where the action or effect of one increases the susceptibility of a biological entity or system (e.g. an organism, cell, cellular component, macromolecular machine mixin, biological or pathological process) to the other"

.

https://w3id.org/biolink/vocab...named_thing_association_object

information_content_entity_to_named_thing_association_object

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"information content entity to named thing association object - connects an association to the object of the association. For example, in a gene-to-phenotype association, the gene is subject and phenotype is object."

.

https://w3id.org/biolink/vocab...ed_thing_association_predicate

information_content_entity_to_named_thing_association_predicate

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"information content entity to named thing association predicate - A high-level grouping for the relationship type. AKA minimal predicate. This is analogous to category for nodes."

.

https://w3id.org/biolink/vocab...amed_thing_association_subject

information_content_entity_to_named_thing_association_subject

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"information content entity to named thing association subject - connects an association to the subject of the association. For example, in a gene-to-phenotype association, the gene is subject and phenotype is object."

.

https://w3id.org/biolink/vocab/interacts_with

interacts_with

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"interacts with - holds between any two entities that directly or indirectly interact with each other"

.

https://w3id.org/biolink/vocab/interbase_coordinate

interbase_coordinate

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"interbase coordinate - A position in interbase coordinates. Interbase coordinates start at position 0 instead of position 1. This is applied to a sequence localization edge."

.

https://w3id.org/biolink/vocab/iri

iri

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"iri - An IRI for an entity. This is determined by the id using expansion rules."

.

https://w3id.org/biolink/vocab/is_active_ingredient_of

is_active_ingredient_of

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"is active ingredient of - holds between a molecular entity and a drug, in which the former is a part of the latter, and is a biologically active component"

.

https://w3id.org/biolink/vocab/is_excipient_of

is_excipient_of

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"is excipient of - holds between a molecular entity and a drug in which the former is a part of the latter, and is a biologically inactive component"

.

https://w3id.org/biolink/vocab/is_frameshift_variant_of

is_frameshift_variant_of

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"is frameshift variant of - holds between a sequence variant and a gene, such the sequence variant causes a disruption of the translational reading frame, because the number of nucleotides inserted or deleted is not a multiple of three."

.

https://w3id.org/biolink/vocab/is_metabolite

is_metabolite

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"is metabolite - indicates whether a molecular entity is a metabolite"

.

https://w3id.org/biolink/vocab/is_metabolite_of

is_metabolite_of

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"is metabolite of - holds between two molecular entities in which the first one is derived from the second one as a product of metabolism"

.

https://w3id.org/biolink/vocab/is_missense_variant_of

is_missense_variant_of

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"is missense variant of - holds between a gene and a sequence variant, such the sequence variant results in a different amino acid sequence but where the length is preserved."

.

https://w3id.org/biolink/vocab/is_nearby_variant_of

is_nearby_variant_of

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"is nearby variant of - holds between a sequence variant and a gene sequence that the variant is genomically close to."

.

https://w3id.org/biolink/vocab/is_non_coding_variant_of

is_non_coding_variant_of

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"is non coding variant of - holds between a sequence variant and a gene, where the variant does not affect the coding sequence"

.

https://w3id.org/biolink/vocab/is_nonsense_variant_of

is_nonsense_variant_of

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"is nonsense variant of - holds between a sequence variant and a gene, such the sequence variant results in a premature stop codon"

.

https://w3id.org/biolink/vocab/is_sequence_variant_of

is_sequence_variant_of

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"is sequence variant of - holds between a sequence variant and a nucleic acid entity"

.

https://w3id.org/biolink/vocab/is_splice_site_variant_of

is_splice_site_variant_of

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"is splice site variant of - holds between a sequence variant and a gene, such the sequence variant is in the canonical splice site of one of the gene's exons."

.

https://w3id.org/biolink/vocab/is_supplement

is_supplement

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"is supplement - "

.

https://w3id.org/biolink/vocab/is_synonymous_variant_of

is_synonymous_variant_of

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"is synonymous variant of - holds between a sequence variant and a gene, such the sequence variant is in the coding sequence of the gene, but results in the same amino acid sequence"

.

https://w3id.org/biolink/vocab/is_toxic

is_toxic

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"is toxic - "

.

https://w3id.org/biolink/vocab/iso_abbreviation

iso_abbreviation

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"iso abbreviation - Standard abbreviation for periodicals in the International Organization for Standardization (ISO) 4 system See https://www.issn.org/services/online-services/access-to-the-ltwa/. If the 'published in' property is set, then the iso abbreviation pertains to the broader publication context (the journal) within which the given publication node is embedded, not the publication itself."

.

https://w3id.org/biolink/vocab/issue

issue

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"issue - issue of a newspaper, a scientific journal or magazine for reference purpose"

.

https://w3id.org/biolink/vocab/keywords

keywords

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"keywords - keywords tagging a publication"

.

https://w3id.org/biolink/vocab/knowledge_source

knowledge_source

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"knowledge source - An Information Resource from which the knowledge expressed in an Association was retrieved, directly or indirectly. This can be any resource through which the knowledge passed on its way to its currently serialized form. In practice, implementers should use one of the more specific subtypes of this generic property."

.

https://w3id.org/biolink/vocab/latitude

latitude

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"latitude - latitude"

.

https://w3id.org/biolink/vocab/likelihood_associated_with

likelihood_associated_with

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"likelihood associated with - "

.

https://w3id.org/biolink/vocab/ln_ratio

ln_ratio

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"ln ratio - the natural log of the ratio of co-occurrence to expected"

.

https://w3id.org/biolink/vocab/ln_ratio_confidence_interval

ln_ratio_confidence_interval

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"ln ratio confidence interval - The 99% confidence interval for the ln_ratio calculation (i.e. the range of values within which the true value has a 99% chance of falling)"

.

https://w3id.org/biolink/vocab/located_in

located_in

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"located in - holds between a material entity and a material entity or site within which it is located (but of which it is not considered a part)"

.

https://w3id.org/biolink/vocab/location_of

location_of

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"location of - holds between material entity or site and a material entity that is located within it (but not considered a part of it)"

.

https://w3id.org/biolink/vocab/longitude

longitude

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"longitude - longitude"

.

https://w3id.org/biolink/vocab/macromolecular_machine_mixin_name

macromolecular_machine_mixin_name

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"macromolecular machine mixin name - genes are typically designated by a short symbol and a full name. We map the symbol to the default display name and use an additional slot for full name"

.

https://w3id.org/biolink/vocab...cal_process_association_object

macromolecular_machine_to_biological_process_association_object

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"macromolecular machine to biological process association object - connects an association to the object of the association. For example, in a gene-to-phenotype association, the gene is subject and phenotype is object."

.

https://w3id.org/biolink/vocab...r_component_association_object

macromolecular_machine_to_cellular_component_association_object

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"macromolecular machine to cellular component association object - connects an association to the object of the association. For example, in a gene-to-phenotype association, the gene is subject and phenotype is object."

.

https://w3id.org/biolink/vocab...tity_association_mixin_subject

macromolecular_machine_to_entity_association_mixin_subject

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"macromolecular machine to entity association mixin subject - connects an association to the subject of the association. For example, in a gene-to-phenotype association, the gene is subject and phenotype is object."

.

https://w3id.org/biolink/vocab...ar_activity_association_object

macromolecular_machine_to_molecular_activity_association_object

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"macromolecular machine to molecular activity association object - connects an association to the object of the association. For example, in a gene-to-phenotype association, the gene is subject and phenotype is object."

.

https://w3id.org/biolink/vocab/manifestation_of

manifestation_of

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"manifestation of - that part of a phenomenon which is directly observable or visibly expressed, or which gives evidence to the underlying process; used in SemMedDB for linking things like dysfunctions and processes to some disease or syndrome"

.

https://w3id.org/biolink/vocab/mapped_predicate

mapped_predicate

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"mapped predicate - The predicate that is being replaced by the fully qualified representation of predicate + subject and object qualifiers. Only to be used in test data and mapping data to help with the transition to the fully qualified predicate model. Not to be used in knowledge graphs."

.

https://w3id.org/biolink/vocab..._derivation_association_object

material_sample_derivation_association_object

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"material sample derivation association object - the material entity the sample was derived from. This may be another material sample, or any other material entity, including for example an organism, a geographic feature, or some environmental material."

.

https://w3id.org/biolink/vocab...rivation_association_predicate

material_sample_derivation_association_predicate

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"material sample derivation association predicate - derivation relationship"

.

https://w3id.org/biolink/vocab...derivation_association_subject

material_sample_derivation_association_subject

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"material sample derivation association subject - the material sample being described"

.

https://w3id.org/biolink/vocab...tity_association_mixin_subject

material_sample_to_entity_association_mixin_subject

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"material sample to entity association mixin subject - the material sample being described"

.

https://w3id.org/biolink/vocab/max_tolerated_dose

max_tolerated_dose

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"max tolerated dose - The highest dose of a drug or treatment that does not cause unacceptable side effects. The maximum tolerated dose is determined in clinical trials by testing increasing doses on different groups of people until the highest dose with acceptable side effects is found. Also called MTD."

.

https://w3id.org/biolink/vocab/mechanism_of_action

mechanism_of_action

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"mechanism of action - a boolean flag to indicate if the edge is part of a path or subgraph of a knowledge graph that constitutes the mechanism of action for a result."

.

https://w3id.org/biolink/vocab/member_of

member_of

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"member of - Defines a mereological relation between a item and a collection."

.

https://w3id.org/biolink/vocab/mentioned_by

mentioned_by

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"mentioned by - refers to is a relation between one named thing and the information content entity that it makes reference to."

.

https://w3id.org/biolink/vocab/mentions

mentions

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"mentions - refers to is a relation between one information content entity and the named thing that it makes reference to."

.

https://w3id.org/biolink/vocab/mesh_terms

mesh_terms

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"mesh terms - mesh terms tagging a publication"

.

https://w3id.org/biolink/vocab/model_of

model_of

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"model of - holds between a thing and some other thing it approximates for purposes of scientific study, in virtue of its exhibiting similar features of the studied entity."

.

https://w3id.org/biolink/vocab...se_association_mixin_predicate

model_to_disease_association_mixin_predicate

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"model to disease association mixin predicate - The relationship to the disease"

.

https://w3id.org/biolink/vocab...ease_association_mixin_subject

model_to_disease_association_mixin_subject

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"model to disease association mixin subject - The entity that serves as the model of the disease. This may be an organism, a strain of organism, a genotype or variant that exhibits similar features, or a gene that when mutated exhibits features of the disease"

.

https://w3id.org/biolink/vocab/molecular_activity_enabled_by

molecular_activity_enabled_by

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"molecular activity enabled by - The gene product, gene, or complex that catalyzes the reaction"

.

https://w3id.org/biolink/vocab/molecular_activity_has_input

molecular_activity_has_input

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"molecular activity has input - A chemical entity that is the input for the reaction"

.

https://w3id.org/biolink/vocab/molecular_activity_has_output

molecular_activity_has_output

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"molecular activity has output - A chemical entity that is the output for the reaction"

.

https://w3id.org/biolink/vocab...ical_entity_association_object

molecular_activity_to_chemical_entity_association_object

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"molecular activity to chemical entity association object - connects an association to the object of the association. For example, in a gene-to-phenotype association, the gene is subject and phenotype is object."

.

https://w3id.org/biolink/vocab...cal_entity_association_subject

molecular_activity_to_chemical_entity_association_subject

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"molecular activity to chemical entity association subject - connects an association to the subject of the association. For example, in a gene-to-phenotype association, the gene is subject and phenotype is object."

.

https://w3id.org/biolink/vocab...ar_activity_association_object

molecular_activity_to_molecular_activity_association_object

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"molecular activity to molecular activity association object - connects an association to the object of the association. For example, in a gene-to-phenotype association, the gene is subject and phenotype is object."

.

https://w3id.org/biolink/vocab...r_activity_association_subject

molecular_activity_to_molecular_activity_association_subject

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"molecular activity to molecular activity association subject - connects an association to the subject of the association. For example, in a gene-to-phenotype association, the gene is subject and phenotype is object."

.

https://w3id.org/biolink/vocab..._to_pathway_association_object

molecular_activity_to_pathway_association_object

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"molecular activity to pathway association object - connects an association to the object of the association. For example, in a gene-to-phenotype association, the gene is subject and phenotype is object."

.

https://w3id.org/biolink/vocab..._pathway_association_predicate

molecular_activity_to_pathway_association_predicate

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"molecular activity to pathway association predicate - A high-level grouping for the relationship type. AKA minimal predicate. This is analogous to category for nodes."

.

https://w3id.org/biolink/vocab...to_pathway_association_subject

molecular_activity_to_pathway_association_subject

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"molecular activity to pathway association subject - connects an association to the subject of the association. For example, in a gene-to-phenotype association, the gene is subject and phenotype is object."

.

https://w3id.org/biolink/vocab/name

name

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"name - A human-readable name for an attribute or entity."

.

https://w3id.org/biolink/vocab...ed_thing_association_predicate

named_thing_associated_with_likelihood_of_named_thing_association_predicate

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"named thing associated with likelihood of named thing association predicate - A high-level grouping for the relationship type. AKA minimal predicate. This is analogous to category for nodes."

.

https://w3id.org/biolink/vocab/named_thing_category

named_thing_category

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"named thing category - Name of the high level ontology class in which this entity is categorized. Corresponds to the label for the biolink entity type class. * In a neo4j database this MAY correspond to the neo4j label tag. * In an RDF database it should be a biolink model class URI. This field is multi-valued. It should include values for ancestors of the biolink class; for example, a protein such as Shh would have category values `biolink:Protein`, `biolink:GeneProduct`, `biolink:MolecularEntity`, ... In an RDF database, nodes will typically have an rdf:type triples. This can be to the most specific biolink class, or potentially to a class more specific than something in biolink. For example, a sequence feature `f` may have a rdf:type assertion to a SO class such as TF_binding_site, which is more specific than anything in biolink. Here we would have categories {biolink:GenomicEntity, biolink:MolecularEntity, biolink:NamedThing}"

.

https://w3id.org/biolink/vocab/narrow_match

narrow_match

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"narrow match - a list of terms from different schemas or terminology systems that have a narrower, more specific meaning. Narrower terms are typically shown as children in a hierarchy or tree."

.

https://w3id.org/biolink/vocab/narrow_matches

narrow_matches

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"narrow matches - A list of terms from different schemas or terminology systems that have a narrower meaning. Such terms often describe a more specific concept from different ontological perspectives."

.

https://w3id.org/biolink/vocab/negated

negated

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"negated - if set to true, then the association is negated i.e. is not true"

.

https://w3id.org/biolink/vocab/negatively_correlated_with

negatively_correlated_with

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"negatively correlated with - A relationship that holds between two concepts represented by variables for which a statistical correlation is demonstrated, wherein variable values move in opposite directions (i.e. increased in one or presence of one correlates with a decrease or absence of the other)."

.

https://w3id.org/biolink/vocab/node_property

node_property

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"node property - A grouping for any property that holds between a node and a value"

.

https://w3id.org/biolink/vocab/nutrient_of

nutrient_of

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"nutrient of - holds between a one or more chemical entities present in food, irrespective of nutritional value (i.e. could also be a contaminant or additive)"

.

https://w3id.org/biolink/vocab/object

object

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"object - connects an association to the object of the association. For example, in a gene-to-phenotype association, the gene is subject and phenotype is object."

.

https://w3id.org/biolink/vocab/object_location_in_text

object_location_in_text

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"object location in text - Character offsets for the text span(s) in the supporting text corresponding to the object concept of the extracted assertion"

.

https://w3id.org/biolink/vocab/occurs_in

occurs_in

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"occurs in - holds between a process and a material entity or site within which the process occurs"

.

https://w3id.org/biolink/vocab/occurs_together_in_literature_with

occurs_together_in_literature_with

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"occurs together in literature with - holds between two entities where their co-occurrence is correlated by counts of publications in which both occur, using some threshold of occurrence as defined by the edge provider."

.

https://w3id.org/biolink/vocab/onset_qualifier

onset_qualifier

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"onset qualifier - a qualifier used in a phenotypic association to state when the phenotype appears is in the subject"

.

https://w3id.org/biolink/vocab/opposite_of

opposite_of

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"opposite of - x is the opposite of y if there exists some distance metric M, and there exists no z such as M(x,z) <= M(x,y) or M(y,z) <= M(y,x). (This description is from RO. Needs to be rephrased)."

.

https://w3id.org/biolink/vocab..._to_entity_association_subject

organism_taxon_to_entity_association_subject

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"organism taxon to entity association subject - organism taxon that is the subject of the association"

.

https://w3id.org/biolink/vocab...environment_association_object

organism_taxon_to_environment_association_object

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"organism taxon to environment association object - the environment in which the organism occurs"

.

https://w3id.org/biolink/vocab...ironment_association_predicate

organism_taxon_to_environment_association_predicate

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"organism taxon to environment association predicate - predicate describing the relationship between the taxon and the environment"

.

https://w3id.org/biolink/vocab...nvironment_association_subject

organism_taxon_to_environment_association_subject

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"organism taxon to environment association subject - the taxon that is the subject of the association"

.

https://w3id.org/biolink/vocab...anism_taxon_association_object

organism_taxon_to_organism_taxon_association_object

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"organism taxon to organism taxon association object - connects an association to the object of the association. For example, in a gene-to-phenotype association, the gene is subject and phenotype is object."

.

https://w3id.org/biolink/vocab...nism_taxon_association_subject

organism_taxon_to_organism_taxon_association_subject

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"organism taxon to organism taxon association subject - connects an association to the subject of the association. For example, in a gene-to-phenotype association, the gene is subject and phenotype is object."

.

https://w3id.org/biolink/vocab...sociated_environmental_context

organism_taxon_to_organism_taxon_interaction_associated_environmental_context

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"organism taxon to organism taxon interaction associated environmental context - the environment in which the two taxa interact"

.

https://w3id.org/biolink/vocab...anism_taxon_interaction_object

organism_taxon_to_organism_taxon_interaction_object

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"organism taxon to organism taxon interaction object - the taxon that is the subject of the association"

.

https://w3id.org/biolink/vocab...sm_taxon_interaction_predicate

organism_taxon_to_organism_taxon_interaction_predicate

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"organism taxon to organism taxon interaction predicate - A high-level grouping for the relationship type. AKA minimal predicate. This is analogous to category for nodes."

.

https://w3id.org/biolink/vocab...nism_taxon_interaction_subject

organism_taxon_to_organism_taxon_interaction_subject

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"organism taxon to organism taxon interaction subject - the taxon that is the subject of the association"

.

https://w3id.org/biolink/vocab...sm_taxon_specialization_object

organism_taxon_to_organism_taxon_specialization_object

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"organism taxon to organism taxon specialization object - the more general taxon"

.

https://w3id.org/biolink/vocab...taxon_specialization_predicate

organism_taxon_to_organism_taxon_specialization_predicate

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"organism taxon to organism taxon specialization predicate - A high-level grouping for the relationship type. AKA minimal predicate. This is analogous to category for nodes."

.

https://w3id.org/biolink/vocab...m_taxon_specialization_subject

organism_taxon_to_organism_taxon_specialization_subject

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"organism taxon to organism taxon specialization subject - the more specific taxon"

.

https://w3id.org/biolink/vocab/organism_to_organism_association_object

organism_to_organism_association_object

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"organism to organism association object - An association between two individual organisms."

.

https://w3id.org/biolink/vocab...o_organism_association_subject

organism_to_organism_association_subject

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"organism to organism association subject - connects an association to the subject of the association. For example, in a gene-to-phenotype association, the gene is subject and phenotype is object."

.

https://w3id.org/biolink/vocab...of_disease_association_subject

organismal_entity_as_a_model_of_disease_association_subject

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"organismal entity as a model of disease association subject - A organismal entity (strain, breed) with a predisposition to a disease, or bred/created specifically to model a disease."

.

https://w3id.org/biolink/vocab/organismal_entity_has_attribute

organismal_entity_has_attribute

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"organismal entity has attribute - may often be an organism attribute"

.

https://w3id.org/biolink/vocab/original_object

original_object

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"original object - used to hold the original object of a relation (or predicate) that an external knowledge source uses before transformation to match the biolink-model specification."

.

https://w3id.org/biolink/vocab/original_predicate

original_predicate

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"original predicate - used to hold the original relation/predicate that an external knowledge source uses before transformation to match the biolink-model specification."

.

https://w3id.org/biolink/vocab/original_subject

original_subject

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"original subject - used to hold the original subject of a relation (or predicate) that an external knowledge source uses before transformation to match the biolink-model specification."

.

https://w3id.org/biolink/vocab/orthologous_to

orthologous_to

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"orthologous to - a homology relationship between entities (typically genes) that diverged after a speciation event."

.

https://w3id.org/biolink/vocab/overlaps

overlaps

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"overlaps - holds between entities that overlap in their extents (materials or processes)"

.

https://w3id.org/biolink/vocab/p_value

p_value

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"p value - A quantitative confidence value that represents the probability of obtaining a result at least as extreme as that actually obtained, assuming that the actual value was the result of chance alone."

.

https://w3id.org/biolink/vocab/pages

pages

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"pages - page number of source referenced for statement or publication"

.

https://w3id.org/biolink/vocab..._to_gene_interaction_predicate

pairwise_gene_to_gene_interaction_predicate

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"pairwise gene to gene interaction predicate - interaction relationship type"

.

https://w3id.org/biolink/vocab/pairwise_molecular_interaction_id

pairwise_molecular_interaction_id

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"pairwise molecular interaction id - identifier for the interaction. This may come from an interaction database such as IMEX."

.

https://w3id.org/biolink/vocab/pairwise_molecular_interaction_object

pairwise_molecular_interaction_object

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"pairwise molecular interaction object - connects an association to the object of the association. For example, in a gene-to-phenotype association, the gene is subject and phenotype is object."

.

https://w3id.org/biolink/vocab...olecular_interaction_predicate

pairwise_molecular_interaction_predicate

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"pairwise molecular interaction predicate - interaction relationship type"

.

https://w3id.org/biolink/vocab/pairwise_molecular_interaction_subject

pairwise_molecular_interaction_subject

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"pairwise molecular interaction subject - connects an association to the subject of the association. For example, in a gene-to-phenotype association, the gene is subject and phenotype is object."

.

https://w3id.org/biolink/vocab/paralogous_to

paralogous_to

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"paralogous to - a homology relationship that holds between entities (typically genes) that diverged after a duplication event."

.

https://w3id.org/biolink/vocab/part_of

part_of

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"part of - holds between parts and wholes (material entities or processes)"

.

https://w3id.org/biolink/vocab/part_qualifier

part_qualifier

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"part qualifier - defines a specific part/component of the core concept (used in cases there this specific part has no IRI we can use to directly represent it, e.g. 'ESR1 transcript' q: polyA tail)."

.

https://w3id.org/biolink/vocab/participates_in

participates_in

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"participates in - holds between a continuant and a process, where the continuant is somehow involved in the process"

.

https://w3id.org/biolink/vocab/phase

phase

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"phase - The phase for a coding sequence entity. For example, phase of a CDS as represented in a GFF3 with a value of 0, 1 or 2."

.

https://w3id.org/biolink/vocab/phenotypic_state

phenotypic_state

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"phenotypic state - in experiments (e.g. gene expression) assaying diseased or unhealthy tissue, the phenotypic state can be put here, e.g. MONDO ID. For healthy tissues, use XXX."

.

https://w3id.org/biolink/vocab/physically_interacts_with

physically_interacts_with

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"physically interacts with - holds between two entities that make physical contact as part of some interaction. does not imply a causal relationship."

.

https://w3id.org/biolink/vocab/population_context_qualifier

population_context_qualifier

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"population context qualifier - a biological population (general, study, cohort, etc.) with a specific set of characteristics to constrain an association."

.

https://w3id.org/biolink/vocab..._population_association_object

population_to_population_association_object

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"population to population association object - the population that form the object of the association"

.

https://w3id.org/biolink/vocab...pulation_association_predicate

population_to_population_association_predicate

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"population to population association predicate - A relationship type that holds between the subject and object populations. Standard mereological relations can be used. E.g. subject part-of object, subject overlaps object. Derivation relationships can also be used"

.

https://w3id.org/biolink/vocab...population_association_subject

population_to_population_association_subject

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"population to population association subject - the population that form the subject of the association"

.

https://w3id.org/biolink/vocab/positively_correlated_with

positively_correlated_with

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"positively correlated with - A relationship that holds between two concepts represented by variables for which a statistical correlation is demonstrated, wherein variable values move together in the same direction (i.e. increased in one or presence of one correlates with an increase or presence of the other)."

.

https://w3id.org/biolink/vocab/preceded_by

preceded_by

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"preceded by - holds between two processes, where the other is completed before the one begins"

.

https://w3id.org/biolink/vocab/precedes

precedes

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"precedes - holds between two processes, where one completes before the other begins"

.

https://w3id.org/biolink/vocab/predicate

predicate

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"predicate - A high-level grouping for the relationship type. AKA minimal predicate. This is analogous to category for nodes."

.

https://w3id.org/biolink/vocab/predicate_mappings

predicate_mappings

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"predicate mappings - A collection of relationships that are not used in biolink, but have biolink patterns that can be used to replace them. This is a temporary slot to help with the transition to the fully qualified predicate model in Biolink3."

.

https://w3id.org/biolink/vocab/predisposes

predisposes

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"predisposes - holds between two entities where exposure to one entity increases the chance of developing the other"

.

https://w3id.org/biolink/vocab/prevented_by

prevented_by

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"prevented by - holds between a potential outcome of which the likelihood was reduced by the application or use of an entity."

.

https://w3id.org/biolink/vocab/prevents

prevents

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"prevents - holds between an entity whose application or use reduces the likelihood of a potential outcome. Typically used to associate a chemical entity, exposure, activity, or medical intervention that can prevent the onset a disease or phenotypic feature."

.

https://w3id.org/biolink/vocab/primary_knowledge_source

primary_knowledge_source

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"primary knowledge source - The most upstream source of the knowledge expressed in an Association that an implementer can identify. Performing a rigorous analysis of upstream data providers is expected; every effort is made to catalog the most upstream source of data in this property. Only one data source should be declared primary in any association. "aggregator knowledge source" can be used to caputre non-primary sources."

.

https://w3id.org/biolink/vocab/produces

produces

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"produces - holds between a material entity and a product that is generated through the intentional actions or functioning of the material entity"

.

https://w3id.org/biolink/vocab/provided_by

provided_by

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"provided by - The value in this node property represents the knowledge provider that created or assembled the node and all of its attributes. Used internally to represent how a particular node made its way into a knowledge provider or graph."

.

https://w3id.org/biolink/vocab/provider

provider

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"provider - person, group, organization or project that provides a piece of information (e.g. a knowledge association)."

.

https://w3id.org/biolink/vocab/publication_id

publication_id

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"publication id - Different kinds of publication subtypes will have different preferred identifiers (curies when feasible). Precedence of identifiers for scientific articles is as follows: PMID if available; DOI if not; actual alternate CURIE otherwise. Enclosing publications (i.e. referenced by 'published in' node property) such as books and journals, should have industry-standard identifier such as from ISBN and ISSN."

.

https://w3id.org/biolink/vocab/publication_name

publication_name

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"publication name - the 'title' of the publication is generally recorded in the 'name' property (inherited from NamedThing). The field name 'title' is now also tagged as an acceptable alias for the node property 'name' (just in case)."

.

https://w3id.org/biolink/vocab/publication_pages

publication_pages

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"publication pages - When a 2-tuple of page numbers are provided, they represent the start and end page of the publication within its parent publication context. For books, this may be set to the total number of pages of the book."

.

https://w3id.org/biolink/vocab/publication_publication_type

publication_publication_type

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"publication publication type - Ontology term for publication type may be drawn from Dublin Core types (https://www.dublincore.org/specifications/dublin-core/dcmi-type-vocabulary/), FRBR-aligned Bibliographic Ontology (https://sparontologies.github.io/fabio/current/fabio.html), the MESH publication types (https://www.nlm.nih.gov/mesh/pubtypes.html), the Confederation of Open Access Repositories (COAR) Controlled Vocabulary for Resource Type Genres (http://vocabularies.coar-repositories.org/documentation/resource_types/), Wikidata (https://www.wikidata.org/wiki/Wikidata:Publication_types), or equivalent publication type ontology. When a given publication type ontology term is used within a given knowledge graph, then the CURIE identified term must be documented in the graph as a concept node of biolink:category biolink:OntologyClass."

.

https://w3id.org/biolink/vocab/publication_type

publication_type

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"publication type - Ontology term for publication type may be drawn from Dublin Core types (https://www.dublincore.org/specifications/dublin-core/dcmi-type-vocabulary/), FRBR-aligned Bibliographic Ontology (https://sparontologies.github.io/fabio/current/fabio.html), the MESH publication types (https://www.nlm.nih.gov/mesh/pubtypes.html), the Confederation of Open Access Repositories (COAR) Controlled Vocabulary for Resource Type Genres (http://vocabularies.coar-repositories.org/documentation/resource_types/), Wikidata (https://www.wikidata.org/wiki/Wikidata:Publication_types), or equivalent publication type ontology. When a given publication type ontology term is used within a given knowledge graph, then the CURIE identified term must be documented in the graph as a concept node of biolink:category biolink:OntologyClass."

.

https://w3id.org/biolink/vocab/publications

publications

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"publications - One or more publications that report the statement expressed in an Association, or provide information used as evidence supporting this statement."

.

https://w3id.org/biolink/vocab/published_in

published_in

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"published in - CURIE identifier of a broader publication context within which the publication may be placed, e.g. a specified book or journal."

.

https://w3id.org/biolink/vocab/publisher

publisher

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"publisher - organization or person responsible for publishing books, periodicals, podcasts, games or software. Note that in the case of publications which have a containing "published in" node property, the publisher association may not be attached directly to the embedded child publication, but only made in between the parent's publication node and the publisher agent of the encompassing publication (e.g. only from the Journal referenced by the 'published_in' property of an journal article Publication node)."

.

https://w3id.org/biolink/vocab/qualified_predicate

qualified_predicate

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"qualified predicate - Predicate to be used in an association when subject and object qualifiers are present and the full reading of the statement requires a qualification to the predicate in use in order to refine or increase the specificity of the full statement reading. This qualifier holds a relationship to be used instead of that expressed by the primary predicate, in a ‘full statement’ reading of the association, where qualifier-based semantics are included. This is necessary only in cases where the primary predicate does not work in a full statement reading."

.

https://w3id.org/biolink/vocab/qualifier

qualifier

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"qualifier - grouping slot for all qualifiers on an edge. useful for testing compliance with association classes"

.

https://w3id.org/biolink/vocab/qualifiers

qualifiers

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"qualifiers - connects an association to qualifiers that modify or qualify the meaning of that association"

.

https://w3id.org/biolink/vocab/quantifier_qualifier

quantifier_qualifier

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"quantifier qualifier - A measurable quantity for the object of the association"

.

https://w3id.org/biolink/vocab/reaction_direction

reaction_direction

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"reaction direction - the direction of a reaction as constrained by the direction enum (ie: left_to_right, neutral, etc.)"

.

https://w3id.org/biolink/vocab/reaction_side

reaction_side

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"reaction side - the side of a reaction being modeled (ie: left or right)"

.

https://w3id.org/biolink/vocab/reaction_to_catalyst_association_object

reaction_to_catalyst_association_object

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"reaction to catalyst association object - connects an association to the object of the association. For example, in a gene-to-phenotype association, the gene is subject and phenotype is object."

.

https://w3id.org/biolink/vocab...articipant_association_subject

reaction_to_participant_association_subject

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"reaction to participant association subject - connects an association to the subject of the association. For example, in a gene-to-phenotype association, the gene is subject and phenotype is object."

.

https://w3id.org/biolink/vocab/regulates

regulates

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"regulates - A more specific form of affects, that implies the effect results from a biologically evolved control mechanism. Gene-affects-gene relationships will (almost) always involve regulation. Exogenous/environmental chemical-affects-gene relationships are not cases of regulation in this definition. Instead these would be captured using the 'affects' predicate, or possibly one of the 'interacts with' predicates depending on the nature of the interaction."

.

https://w3id.org/biolink/vocab/related_to

related_to

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"related to - A relationship that is asserted between two named things"

.

https://w3id.org/biolink/vocab/related_to_at_concept_level

related_to_at_concept_level

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"related to at concept level - Represents a relationship held between terminology components that describe the conceptual model of a domain."

.

https://w3id.org/biolink/vocab/related_to_at_instance_level

related_to_at_instance_level

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"related to at instance level - Represents a relationship held between two instances of a data classes. Much like an assertion component, in an ABox, these represent facts associated with the conceptual model."

.

https://w3id.org/biolink/vocab/relative_frequency_object

relative_frequency_object

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"relative frequency object - The frequency at which subject and object concepts co-occur in records within a dataset/cohort, relative to the frequency at which the object concept appears in these same records."

.

https://w3id.org/biolink/vocab...ncy_object_confidence_interval

relative_frequency_object_confidence_interval

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"relative frequency object confidence interval - The 99% confidence interval for the relative_frequency_object calculation (i.e. the range of values within which the true value has a 99% chance of falling)"

.

https://w3id.org/biolink/vocab/relative_frequency_subject

relative_frequency_subject

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"relative frequency subject - The frequency at which subject and object concepts co-occur in records within a dataset/cohort, relative to the frequency at which the subject concept appears in these same records."

.

https://w3id.org/biolink/vocab...cy_subject_confidence_interval

relative_frequency_subject_confidence_interval

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"relative frequency subject confidence interval - The 99% confidence interval for the relative_frequency_subject calculation (i.e. the range of values within which the true value has a 99% chance of falling)"

.

https://w3id.org/biolink/vocab/resource

resource

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"resource - The CURIE for an Information Resource that served as a source of knowledge expressed in an Edge, or a source of data used to generate this knowledge."

.

https://w3id.org/biolink/vocab/resource_role

resource_role

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"resource role - The role played by the InformationResource in serving as a source for an Edge. Note that a given Edge should have one and only one 'primary' source, and may have any number of 'aggregator' or 'supporting data' sources."

.

https://w3id.org/biolink/vocab/response_affected_by

response_affected_by

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"response affected by - holds between two chemical entities where the susceptibility of a biological entity or system (e.g. an organism, cell, cellular component, macromolecular machine mixin, biological or pathological process) of one is affected by the action of the other."

.

https://w3id.org/biolink/vocab/retrieval_source_resource

retrieval_source_resource

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"retrieval source resource - The InformationResource that served as a source for the knowledge expressed in an Edge, or data used to generate this knowledge."

.

https://w3id.org/biolink/vocab/retrieval_source_resource_role

retrieval_source_resource_role

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"retrieval source resource role - The role of the InformationResource in the retrieval of the knowledge expressed in an Edge, or data used to generate this knowledge."

.

https://w3id.org/biolink/vocab/retrieval_source_upstream_resources

retrieval_source_upstream_resources

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"retrieval source upstream resources - The InformationResources that served as a source for the InformationResource that served as a source for the knowledge expressed in an Edge, or data used to generate this knowledge."

.

https://w3id.org/biolink/vocab/routes_of_delivery

routes_of_delivery

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"routes of delivery - the method or process of administering a pharmaceutical compound to achieve a therapeutic effect in humans or animals."

.

https://w3id.org/biolink/vocab/same_as

same_as

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"same as - holds between two entities that are considered equivalent to each other"

.

https://w3id.org/biolink/vocab/sequence_feature_relationship_object

sequence_feature_relationship_object

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"sequence feature relationship object - connects an association to the object of the association. For example, in a gene-to-phenotype association, the gene is subject and phenotype is object."

.

https://w3id.org/biolink/vocab/sequence_feature_relationship_subject

sequence_feature_relationship_subject

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"sequence feature relationship subject - connects an association to the subject of the association. For example, in a gene-to-phenotype association, the gene is subject and phenotype is object."

.

https://w3id.org/biolink/vocab/sequence_localization_attribute

sequence_localization_attribute

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"sequence localization attribute - An attribute that can be applied to a genome sequence localization edge. These edges connect a nucleic acid entity such as an exon to an entity such as a chromosome. Edge properties are used to ascribe specific positional information and other metadata to the localization. In pragmatic terms this can be thought of as columns in a GFF3 line."

.

https://w3id.org/biolink/vocab...ariant_has_biological_sequence

sequence_variant_has_biological_sequence

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"sequence variant has biological sequence - The state of the sequence w.r.t a reference sequence"

.

https://w3id.org/biolink/vocab/sequence_variant_has_gene

sequence_variant_has_gene

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"sequence variant has gene - Each allele can be associated with any number of genes"

.

https://w3id.org/biolink/vocab/sequence_variant_id

sequence_variant_id

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"sequence variant id - A unique identifier for an entity. Must be either a CURIE shorthand for a URI or a complete URI"

.

https://w3id.org/biolink/vocab...s_treatment_association_object

sequence_variant_modulates_treatment_association_object

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"sequence variant modulates treatment association object - treatment whose efficacy is modulated by the subject variant"

.

https://w3id.org/biolink/vocab..._treatment_association_subject

sequence_variant_modulates_treatment_association_subject

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"sequence variant modulates treatment association subject - variant that modulates the treatment of some disease"

.

https://w3id.org/biolink/vocab/sequence_variant_qualifier

sequence_variant_qualifier

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"sequence variant qualifier - a qualifier used in an association with the variant"

.

https://w3id.org/biolink/vocab/serial_id

serial_id

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"serial id - Serials (journals) should have industry-standard identifier such as from ISSN."

.

https://w3id.org/biolink/vocab/serial_type

serial_type

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"serial type - Should generally be set to an ontology class defined term for 'serial' or 'journal'."

.

https://w3id.org/biolink/vocab/severity_qualifier

severity_qualifier

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"severity qualifier - a qualifier used in a phenotypic association to state how severe the phenotype is in the subject"

.

https://w3id.org/biolink/vocab/sex_qualifier

sex_qualifier

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"sex qualifier - a qualifier used in a phenotypic association to state whether the association is specific to a particular sex."

.

https://w3id.org/biolink/vocab/similar_to

similar_to

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"similar to - holds between an entity and some other entity with similar features."

.

https://w3id.org/biolink/vocab/small_molecule_id

small_molecule_id

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"small molecule id - A unique identifier for an entity. Must be either a CURIE shorthand for a URI or a complete URI"

.

https://w3id.org/biolink/vocab/socioeconomic_exposure_has_attribute

socioeconomic_exposure_has_attribute

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"socioeconomic exposure has attribute - connects any entity to an attribute"

.

https://w3id.org/biolink/vocab/species_context_qualifier

species_context_qualifier

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"species context qualifier - A statement qualifier representing a taxonomic category of species in which a relationship expressed in an association took place."

.

https://w3id.org/biolink/vocab/stage_qualifier

stage_qualifier

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"stage qualifier - stage during which gene or protein expression of takes place."

.

https://w3id.org/biolink/vocab/start_coordinate

start_coordinate

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"start coordinate - The position at which the subject genomic entity starts on the chromosome or other entity to which it is located on. (ie: the start of the sequence being referenced is 1)."

.

https://w3id.org/biolink/vocab/start_interbase_coordinate

start_interbase_coordinate

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"start interbase coordinate - The position at which the subject nucleic acid entity starts on the chromosome or other entity to which it is located on. (ie: the start of the sequence being referenced is 0)."

.

https://w3id.org/biolink/vocab/statement_qualifier

statement_qualifier

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"statement qualifier - "

.

https://w3id.org/biolink/vocab/stoichiometry

stoichiometry

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"stoichiometry - the relationship between the relative quantities of substances taking part in a reaction or forming a compound, typically a ratio of whole integers."

.

https://w3id.org/biolink/vocab/strand

strand

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"strand - The strand on which a feature is located. Has a value of '+' (sense strand or forward strand) or '-' (anti-sense strand or reverse strand)."

.

https://w3id.org/biolink/vocab/subclass_of

subclass_of

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"subclass of - holds between two classes where the domain class is a specialization of the range class"

.

https://w3id.org/biolink/vocab/subject

subject

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"subject - connects an association to the subject of the association. For example, in a gene-to-phenotype association, the gene is subject and phenotype is object."

.

https://w3id.org/biolink/vocab/subject_location_in_text

subject_location_in_text

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"subject location in text - Character offsets for the text span(s) in the supporting text corresponding to the subject concept of the extracted assertion."

.

https://w3id.org/biolink/vocab/summary

summary

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"summary - executive summary of a publication"

.

https://w3id.org/biolink/vocab/superclass_of

superclass_of

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"superclass of - holds between two classes where the domain class is a super class of the range class"

.

https://w3id.org/biolink/vocab/support_graphs

support_graphs

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"support graphs - A list of knowledge graphs that support the existence of this node."

.

https://w3id.org/biolink/vocab/supporting_data_set

supporting_data_set

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"supporting data set - A set of data used as evidence to generate the knowledge expressed in an Association (e.g. through computation on, reasoning or inference over the retrieved data)."

.

https://w3id.org/biolink/vocab/supporting_data_source

supporting_data_source

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"supporting data source - An Information Resource from which data was retrieved and subsequently used as evidence to generate the knowledge expressed in an Association (e.g. through computation on, reasoning or inference over the retrieved data)."

.

https://w3id.org/biolink/vocab/supporting_document_type

supporting_document_type

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"supporting document type - The document type (e.g., Journal Article, Case Study, Preprint) for the supporting document used in a Text Mining Result."

.

https://w3id.org/biolink/vocab/supporting_document_year

supporting_document_year

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"supporting document year - The document year (typically the publication year) for the supporting document used in a Text Mining Result."

.

https://w3id.org/biolink/vocab/supporting_documents

supporting_documents

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"supporting documents - One or more referencable documents that report the statement expressed in an Association, or provide information used as evidence supporting this statement."

.

https://w3id.org/biolink/vocab/supporting_study_cohort

supporting_study_cohort

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"supporting study cohort - A description of a study population/cohort that was interrogated to provide evidence for the association (e.g. the inclusion and exclusion criteria)."

.

https://w3id.org/biolink/vocab/supporting_study_context

supporting_study_context

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"supporting study context - A term or terms describing the experimental setting/context in which evidence supporting the Association was generated ('context' may be defined by many factors, including taxon, model system (e.g. cell line type), tissue type, disease, etc.)."

.

https://w3id.org/biolink/vocab/supporting_study_date_range

supporting_study_date_range

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"supporting study date range - The date range over which data was collected in a study that provided evidence for an Association."

.

https://w3id.org/biolink/vocab/supporting_study_metadata

supporting_study_metadata

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"supporting study metadata - Information about a study used to generate information used as evidence to support the knowledge expressed in an Association. In practice, data creators should use one of the more specific subtypes of this property."

.

https://w3id.org/biolink/vocab/supporting_study_method_description

supporting_study_method_description

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"supporting study method description - A uri or curie pointing to information about the methodology used to generate data supporting an Association."

.

https://w3id.org/biolink/vocab/supporting_study_method_type

supporting_study_method_type

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"supporting study method type - A type of method that was applied in a study used to generate the information used as evidence (e.g. a type of experimental assay, or statistical calculation, or computational analysis)."

.

https://w3id.org/biolink/vocab/supporting_study_size

supporting_study_size

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"supporting study size - The sample size used in a study that provided evidence for the association (e.g. 'n' of a cohort for a clinical study)."

.

https://w3id.org/biolink/vocab/supporting_text

supporting_text

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"supporting text - The segment of text from a document that supports the mined assertion."

.

https://w3id.org/biolink/vocab/supporting_text_section_type

supporting_text_section_type

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"supporting text section type - The section of the supporting text of a Text Mining Result within the supporting document. This is in the form of the name of the document section (e.g., Abstract, Introduction) that contains the supporting text."

.

https://w3id.org/biolink/vocab/symbol

symbol

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"symbol - Symbol for a particular thing"

.

https://w3id.org/biolink/vocab/synonym

synonym

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"synonym - Alternate human-readable names for a thing"

.

https://w3id.org/biolink/vocab/systematic_synonym

systematic_synonym

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"systematic synonym - more commonly used for gene symbols in yeast"

.

https://w3id.org/biolink/vocab/target_for

target_for

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"target for - A gene is a target of a disease when its products are druggable and when a drug interaction with the gene product could have a therapeutic effect"

.

https://w3id.org/biolink/vocab/taxon_to_taxon_association_object

taxon_to_taxon_association_object

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"taxon to taxon association object - An association between individuals of different taxa."

.

https://w3id.org/biolink/vocab/taxon_to_taxon_association_subject

taxon_to_taxon_association_subject

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"taxon to taxon association subject - connects an association to the subject of the association. For example, in a gene-to-phenotype association, the gene is subject and phenotype is object."

.

https://w3id.org/biolink/vocab/temporal_context_qualifier

temporal_context_qualifier

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"temporal context qualifier - a constraint of time placed upon the truth value of an association. for time intervales, use temporal interval qualifier."

.

https://w3id.org/biolink/vocab/temporal_interval_qualifier

temporal_interval_qualifier

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"temporal interval qualifier - a constraint of a time interval placed upon the truth value of an association."

.

https://w3id.org/biolink/vocab/temporally_related_to

temporally_related_to

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"temporally related to - holds between two entities with a temporal relationship"

.

https://w3id.org/biolink/vocab/timepoint

timepoint

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"timepoint - a point in time"

.

https://w3id.org/biolink/vocab/trade_name

trade_name

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"trade name - "

.

https://w3id.org/biolink/vocab/transcribed_from

transcribed_from

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"transcribed from - x is transcribed from y if and only if x is synthesized from template y"

.

https://w3id.org/biolink/vocab/transcribed_to

transcribed_to

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"transcribed to - inverse of transcribed from"

.

https://w3id.org/biolink/vocab/transcript_to_gene_relationship_object

transcript_to_gene_relationship_object

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"transcript to gene relationship object - connects an association to the object of the association. For example, in a gene-to-phenotype association, the gene is subject and phenotype is object."

.

https://w3id.org/biolink/vocab/transcript_to_gene_relationship_subject

transcript_to_gene_relationship_subject

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"transcript to gene relationship subject - connects an association to the subject of the association. For example, in a gene-to-phenotype association, the gene is subject and phenotype is object."

.

https://w3id.org/biolink/vocab/translates_to

translates_to

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"translates to - x (amino acid chain/polypeptide) is the ribosomal translation of y (transcript) if and only if a ribosome reads y (transcript) through a series of triplet codon-amino acid adaptor activities (GO:0030533) and produces x (amino acid chain/polypeptide)"

.

https://w3id.org/biolink/vocab/translation_of

translation_of

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"translation of - inverse of translates to"

.

https://w3id.org/biolink/vocab/treated_by

treated_by

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"treated by - holds between a disease or phenotypic feature and a therapeutic process or chemical entity that is used to treat the condition"

.

https://w3id.org/biolink/vocab/treats

treats

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"treats - holds between a therapeutic procedure or chemical entity and a disease or phenotypic feature that it is used to treat"

.

https://w3id.org/biolink/vocab/update_date

update_date

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"update date - date on which an entity was updated. This can be applied to nodes or edges"

.

https://w3id.org/biolink/vocab/upstream_resources

upstream_resources

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"upstream resources - An upstream InformationResource from which the resource being described directly retrieved a record of the knowledge expressed in the Edge, or data used to generate this knowledge. This is an array because there are cases where a merged Edge holds knowledge that was retrieved from multiple sources. e.g. an Edge provided by the ARAGORN ARA can expressing knowledge it retrieved from both the automat-mychem-info and molepro KPs, which both provided it with records of this single fact."

.

https://w3id.org/biolink/vocab...of_disease_association_subject

variant_as_a_model_of_disease_association_subject

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"variant as a model of disease association subject - A variant that has a role in modeling the disease."

.

https://w3id.org/biolink/vocab/variant_to_disease_association_object

variant_to_disease_association_object

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"variant to disease association object - a disease that is associated with that variant"

.

https://w3id.org/biolink/vocab..._disease_association_predicate

variant_to_disease_association_predicate

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"variant to disease association predicate - E.g. is pathogenic for"

.

https://w3id.org/biolink/vocab/variant_to_disease_association_subject

variant_to_disease_association_subject

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"variant to disease association subject - a sequence variant in which the allele state is associated in some way with the disease state"

.

https://w3id.org/biolink/vocab...tity_association_mixin_subject

variant_to_entity_association_mixin_subject

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"variant to entity association mixin subject - a sequence variant in which the allele state is associated with some other entity"

.

https://w3id.org/biolink/vocab/variant_to_gene_association_object

variant_to_gene_association_object

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"variant to gene association object - connects an association to the object of the association. For example, in a gene-to-phenotype association, the gene is subject and phenotype is object."

.

https://w3id.org/biolink/vocab/variant_to_gene_association_predicate

variant_to_gene_association_predicate

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"variant to gene association predicate - A high-level grouping for the relationship type. AKA minimal predicate. This is analogous to category for nodes."

.

https://w3id.org/biolink/vocab...pression_association_predicate

variant_to_gene_expression_association_predicate

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"variant to gene expression association predicate - A high-level grouping for the relationship type. AKA minimal predicate. This is analogous to category for nodes."

.

https://w3id.org/biolink/vocab...ic_feature_association_subject

variant_to_phenotypic_feature_association_subject

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"variant to phenotypic feature association subject - a sequence variant in which the allele state is associated in some way with the phenotype state"

.

https://w3id.org/biolink/vocab...pulation_association_has_count

variant_to_population_association_has_count

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"variant to population association has count - number in object population that carry a particular allele, aka allele count"

.

https://w3id.org/biolink/vocab...ation_association_has_quotient

variant_to_population_association_has_quotient

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"variant to population association has quotient - frequency of allele in population, expressed as a number with allele divided by number in reference population, aka allele frequency"

.

https://w3id.org/biolink/vocab...pulation_association_has_total

variant_to_population_association_has_total

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"variant to population association has total - number all populations that carry a particular allele, aka allele number"

.

https://w3id.org/biolink/vocab..._population_association_object

variant_to_population_association_object

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"variant to population association object - the population that is observed to have the frequency"

.

https://w3id.org/biolink/vocab...population_association_subject

variant_to_population_association_subject

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"variant to population association subject - an allele that has a certain frequency in a given population"

.

https://w3id.org/biolink/vocab/volume

volume

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"volume - volume of a book or music release in a collection/series or a published collection of journal issues in a serial publication"

.

https://w3id.org/biolink/vocab/xenologous_to

xenologous_to

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"xenologous to - a homology relationship characterized by an interspecies (horizontal) transfer since the common ancestor."

.

https://w3id.org/biolink/vocab/xref

xref

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"xref - Alternate CURIEs for a thing"

.

This is the identifier for the assertion of this nanopublication. http://purl.org/np/RArAFrdM4r...#assertion The assertion above http://www.w3.org/ns/prov#wasDerivedFrom

wasDerivedFrom

https://raw.githubusercontent....model/master/biolink-model.ttl

biolink-model.ttl

.

This is the identifier for this whole nanopublication. http://purl.org/np/RArAFrdM4r... This nanopublication date and time when the nanopublication was created http://purl.org/dc/terms/created was created on (this is a literal)

"2023-03-31T14:24:26.976+02:00"

(xsd:dateTime) .

This is a local identifier minted within the nanopublication. http://purl.org/np/RArAFrdM4r...#sig

sig

http://purl.org/nanopub/x/hasSignatureTarget has as target This is the identifier for this whole nanopublication. http://purl.org/np/RArAFrdM4r... this nanopublication .

This is a local identifier minted within the nanopublication. http://purl.org/np/RArAFrdM4r...#sig

sig

http://purl.org/nanopub/x/hasAlgorithm has the algorithm (this is a literal)

"RSA"

.

This is a local identifier minted within the nanopublication. http://purl.org/np/RArAFrdM4r...#sig

sig

http://purl.org/nanopub/x/hasPublicKey has the public key (this is a literal)

"MIGfMA0GCSqGSIb3DQEBAQUAA4GNADCBiQKBgQCwUtewGCpT5vIfXYE1bmf/Uqu1ojqnWdYxv+ySO80ul8Gu7m8KoyPAwuvaPj0lvPtHrg000qMmkxzKhYknEjq8v7EerxZNYp5B3/3+5ZpuWOYAs78UnQVjbHSmDdmryr4D4VvvNIiUmd0yxci47dTFUj4DvfHnGd6hVe5+goqdcwIDAQAB"

.

This is a local identifier minted within the nanopublication. http://purl.org/np/RArAFrdM4r...#sig

sig

http://purl.org/nanopub/x/hasSignature has the signature (this is a literal)

"ZyeFvXIpYeGgQkl3kNfsrbfCW9BKWlY/3UbXaQec60RafxgQxyH86aSt8WfrW6G35aZxEVsASrDKb4E7c8a2NMRJkVafnkZ77puckYo7zmDgyNrw3Ggv+8YI0WfA4x1zU5+YL1oOZnCPAbEkCuBqIoNN15tnYUizrea7667ShAY="

.

This is the identifier for this whole nanopublication. http://purl.org/np/RArAFrdM4r...

this nanopublication

http://purl.org/dc/terms/creator

creator

https://orcid.org/0000-0002-1267-0234

Tobias Kuhn

.

Tobias Kuhn, 31 Mar 2023, 12:24:26 UTC

References