_1 (explore) | nanodash

_1

Full identifier: https://w3id.org/np/RAG8znTopkvHhG060PKv0CP-Db-iWBncbDePPFdoUfNvU/_1

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http://schema.org/StructuredValue StructuredValue ( )

Minted in Nanopublication

RAG8znTopk RoCrate comment approve/disapprove edit as derived nanopublication

" " .

"./" .

"2022-08-05T01:51:49.692Z" .

"Rhometa includes various models to perform population recombination rate estimation on metagenomic datasets. It is primarily built using nextflow, a workflow management tool and the python programming language. Here a repository of all the results generated for Rhometa and the scripts used is provided. In some cases, different pipelines were used during the course of developing rhometa such as our nextflow LDhat pipeline. LDHat is a population recombination rate estimation program for aligned sequences and simulation pipelines etc, all relevant scripts and nextflow works are included where applicable. The github repositories for all pipelines are provided in the accompanying manuscript. File names starting with “figure” are all related to the evaluation of different forms of simulated data. The simulated files are not included to save space, but the scripts used to generate the files are and final results are included. The file Lookup_tables.zip is related to all the lookup tables used during the analysis. Lookup tables themselves are very large and as such are not included, but all relevant scripts used to generate them are. The file s_pneumoniae.zip is related to the analysis of a real dataset involving an S. pneumoniae transformation experiment. Experiment accession codes are included but not bam files and the reference. The details of how the BAM was generated and the reference file used are described in the manuscript. All results and scripts used are included." .

"ce2f83c013a711edb084ed90e8a0b9fc" .

"analysed data and scripts used" .

"Rhometa manuscript supporting data" .

"2022" .

"This is the UTS Research Data Portal. For any questions, please get in touch with us at eResearch-it@uts.edu.au" .

"UTS Research Data Portal" .

"Oni ocfl tools" .

"git+https://github.com/Arkisto-Platform/oni-ocfl.git" .

(xsd:dateTime) .

0009-0008-3635-347X, 18 Jul 2025, 12:16:56 UTC

References

Nanopublication	Part	Subject	Predicate	Object	Published By	Published On
https://w3id.org/np/RAG8znTopk... RAG8znTopk	links a nanopublication to its assertion http://www.nanopub.org/nschema#hasAssertion assertion	_1	http://www.w3.org/1999/02/22-rdf-syntax-ns#type type	http://schema.org/StructuredValue StructuredValue	(unknown)	2025-07-18T12:16:56.792Z
https://w3id.org/np/RAG8znTopk... RAG8znTopk	links a nanopublication to its assertion http://www.nanopub.org/nschema#hasAssertion assertion	_1	http://schema.org/url url	_:FOR/08	(unknown)	2025-07-18T12:16:56.792Z
https://w3id.org/np/RAG8znTopk... RAG8znTopk	links a nanopublication to its assertion http://www.nanopub.org/nschema#hasAssertion assertion	_1	http://schema.org/name name	08 - INFORMATION AND COMPUTING SCIENCES	(unknown)	2025-07-18T12:16:56.792Z
https://w3id.org/np/RAG8znTopk... RAG8znTopk	links a nanopublication to its assertion http://www.nanopub.org/nschema#hasAssertion assertion	_1	http://schema.org/identifier identifier	_:FOR/08	(unknown)	2025-07-18T12:16:56.792Z
https://w3id.org/np/RAG8znTopk... RAG8znTopk	links a nanopublication to its assertion http://www.nanopub.org/nschema#hasAssertion assertion	arcp://name,uts_public_data_repo/ce2f83c013a711edb084ed90e8a0b9fc	http://schema.org/about about	_1	(unknown)	2025-07-18T12:16:56.792Z

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