Expressing an association between an organism and a nucleotide sequence (extended) (explore)

Expressing an association between an organism and a nucleotide sequence (extended)

Full identifier: https://w3id.org/np/RA3MNdcfOwPpTdX3rhG-07i9dwQnQIZ3k4pRSSEjJZ1nc

Assigned to 1 class:

http://www.nanopub.org/nschema#Nanopublication Nanopublication ( )

Status

Nanopublication

Expressing an association between an organism and a nucleotide sequence (extended) AssertionTemplate comment approve/disapprove edit as derived nanopublication create new with same template use template

This is the identifier for the assertion of this nanopublication. https://w3id.org/np/RA3MNdcfOw.../assertion This assertion http://www.w3.org/1999/02/22-rdf-syntax-ns#type is a https://w3id.org/np/o/ntemplate/AssertionTemplate assertion template .

This is the identifier for the assertion of this nanopublication. https://w3id.org/np/RA3MNdcfOw.../assertion This assertion http://www.w3.org/2000/01/rdf-schema#label is labeled as (this is a literal)

"Expressing an association between an organism and a nucleotide sequence (extended)"

This is the identifier for the assertion of this nanopublication. https://w3id.org/np/RA3MNdcfOw.../assertion This assertion http://purl.org/dc/terms/description has the description (this is a literal)

Such a nanopublication expresses an association between an organism (normally identified as belonging to a certain taxon concept) and a nucleotide sequence (that can correspond to a full genome sequence, a gene, or a subunit of a gene), for example expressing that Sequence ID (INSDC / Genbank accession number or BOLD Process ID) identifies Organism X as belonging to a Taxon Concept Y.

This is the identifier for the assertion of this nanopublication. https://w3id.org/np/RA3MNdcfOw.../assertion This assertion https://w3id.org/np/o/ntemplate/hasTag has tag (this is a literal)

"Biodiversity"

This is the identifier for the assertion of this nanopublication. https://w3id.org/np/RA3MNdcfOw.../assertion This assertion https://w3id.org/np/o/ntemplate/hasDefaultProvenance has default provenance http://purl.org/np/RAYfEAP8KA...

RAYfEAP8KA

This is the identifier for the assertion of this nanopublication. https://w3id.org/np/RA3MNdcfOw.../assertion This assertion https://w3id.org/np/o/ntemplate/hasTargetNanopubType has the target nanopub type https://w3id.org/kpxl/biodiv/terms/BiodivNanopub

BiodivNanopub

This is the identifier for the assertion of this nanopublication. https://w3id.org/np/RA3MNdcfOw.../assertion This assertion assigns a pattern used to generate a human-readable label for the whole nanopublication https://w3id.org/np/o/ntemplate/hasNanopubLabelPattern has the nanopub label pattern (this is a literal)

"Organism of ${taxonname} - ${relation} - ${nucleotidesequence}"

This is a local identifier minted within the nanopublication. https://w3id.org/np/RA3MNdcfOw.../st00

st00

http://www.w3.org/1999/02/22-rdf-syntax-ns#subject has as subject This is a local identifier minted within the nanopublication. https://w3id.org/np/RA3MNdcfOw.../association

association

This is a local identifier minted within the nanopublication. https://w3id.org/np/RA3MNdcfOw.../st00

st00

http://www.w3.org/1999/02/22-rdf-syntax-ns#predicate has as predicate http://www.w3.org/1999/02/22-rdf-syntax-ns#type

is a

This is a local identifier minted within the nanopublication. https://w3id.org/np/RA3MNdcfOw.../st00

st00

http://www.w3.org/1999/02/22-rdf-syntax-ns#object has as object https://w3id.org/kpxl/biodiv/t...oNucleotideSequenceAssociation

OrganismToNucleotideSequenceAssociation

This is a local identifier minted within the nanopublication. https://w3id.org/np/RA3MNdcfOw.../st05

st05

http://www.w3.org/1999/02/22-rdf-syntax-ns#subject has as subject This is a local identifier minted within the nanopublication. https://w3id.org/np/RA3MNdcfOw.../association

association

This is a local identifier minted within the nanopublication. https://w3id.org/np/RA3MNdcfOw.../st05

st05

http://www.w3.org/1999/02/22-rdf-syntax-ns#predicate has as predicate https://w3id.org/biolink/vocab/predicate

predicate

This is a local identifier minted within the nanopublication. https://w3id.org/np/RA3MNdcfOw.../st05

st05

http://www.w3.org/1999/02/22-rdf-syntax-ns#object has as object This is a local identifier minted within the nanopublication. https://w3id.org/np/RA3MNdcfOw.../relation

relation

This is a local identifier minted within the nanopublication. https://w3id.org/np/RA3MNdcfOw.../st09

st09

http://www.w3.org/1999/02/22-rdf-syntax-ns#subject has as subject This is a local identifier minted within the nanopublication. https://w3id.org/np/RA3MNdcfOw.../association

association

This is a local identifier minted within the nanopublication. https://w3id.org/np/RA3MNdcfOw.../st09

st09

http://www.w3.org/1999/02/22-rdf-syntax-ns#predicate has as predicate https://w3id.org/biolink/vocab/subject

subject

This is a local identifier minted within the nanopublication. https://w3id.org/np/RA3MNdcfOw.../st09

st09

http://www.w3.org/1999/02/22-rdf-syntax-ns#object has as object This is a local identifier minted within the nanopublication. https://w3id.org/np/RA3MNdcfOw.../organism

organism

This is a local identifier minted within the nanopublication. https://w3id.org/np/RA3MNdcfOw.../st10

st10

http://www.w3.org/1999/02/22-rdf-syntax-ns#subject has as subject This is a local identifier minted within the nanopublication. https://w3id.org/np/RA3MNdcfOw.../organism

organism

This is a local identifier minted within the nanopublication. https://w3id.org/np/RA3MNdcfOw.../st10

st10

http://www.w3.org/1999/02/22-rdf-syntax-ns#predicate has as predicate http://www.w3.org/1999/02/22-rdf-syntax-ns#type

is a

This is a local identifier minted within the nanopublication. https://w3id.org/np/RA3MNdcfOw.../st10

st10

http://www.w3.org/1999/02/22-rdf-syntax-ns#object has as object This is a local identifier minted within the nanopublication. https://w3id.org/np/RA3MNdcfOw.../taxon

taxon

This is a local identifier minted within the nanopublication. https://w3id.org/np/RA3MNdcfOw.../st11

st11

http://www.w3.org/1999/02/22-rdf-syntax-ns#subject has as subject This is a local identifier minted within the nanopublication. https://w3id.org/np/RA3MNdcfOw.../taxon

taxon

This is a local identifier minted within the nanopublication. https://w3id.org/np/RA3MNdcfOw.../st11

st11

http://www.w3.org/1999/02/22-rdf-syntax-ns#predicate has as predicate https://w3id.org/kpxl/biodiv/terms/hasTaxonName

hasTaxonName

This is a local identifier minted within the nanopublication. https://w3id.org/np/RA3MNdcfOw.../st11

st11

http://www.w3.org/1999/02/22-rdf-syntax-ns#object has as object This is a local identifier minted within the nanopublication. https://w3id.org/np/RA3MNdcfOw.../taxonname

taxonname

This is a local identifier minted within the nanopublication. https://w3id.org/np/RA3MNdcfOw.../st12

st12

http://www.w3.org/1999/02/22-rdf-syntax-ns#subject has as subject This is a local identifier minted within the nanopublication. https://w3id.org/np/RA3MNdcfOw.../taxon

taxon

This is a local identifier minted within the nanopublication. https://w3id.org/np/RA3MNdcfOw.../st12

st12

http://www.w3.org/1999/02/22-rdf-syntax-ns#predicate has as predicate https://w3id.org/kpxl/biodiv/terms/hasTaxonConceptDefinition

hasTaxonConceptDefinition

This is a local identifier minted within the nanopublication. https://w3id.org/np/RA3MNdcfOw.../st12

st12

http://www.w3.org/1999/02/22-rdf-syntax-ns#object has as object This is a local identifier minted within the nanopublication. https://w3id.org/np/RA3MNdcfOw.../taxondef

taxondef

This is a local identifier minted within the nanopublication. https://w3id.org/np/RA3MNdcfOw.../st20

st20

http://www.w3.org/1999/02/22-rdf-syntax-ns#subject has as subject This is a local identifier minted within the nanopublication. https://w3id.org/np/RA3MNdcfOw.../organism

organism

This is a local identifier minted within the nanopublication. https://w3id.org/np/RA3MNdcfOw.../st20

st20

http://www.w3.org/1999/02/22-rdf-syntax-ns#predicate has as predicate https://w3id.org/kpxl/biodiv/terms/hasLifeCycleStage

hasLifeCycleStage

This is a local identifier minted within the nanopublication. https://w3id.org/np/RA3MNdcfOw.../st20

st20

http://www.w3.org/1999/02/22-rdf-syntax-ns#object has as object This is a local identifier minted within the nanopublication. https://w3id.org/np/RA3MNdcfOw.../lifecyclestage

lifecyclestage

This is a local identifier minted within the nanopublication. https://w3id.org/np/RA3MNdcfOw.../st25

st25

http://www.w3.org/1999/02/22-rdf-syntax-ns#subject has as subject This is a local identifier minted within the nanopublication. https://w3id.org/np/RA3MNdcfOw.../organism

organism

This is a local identifier minted within the nanopublication. https://w3id.org/np/RA3MNdcfOw.../st25

st25

http://www.w3.org/1999/02/22-rdf-syntax-ns#predicate has as predicate https://w3id.org/kpxl/biodiv/terms/hasOccurrence

hasOccurrence

This is a local identifier minted within the nanopublication. https://w3id.org/np/RA3MNdcfOw.../st25

st25

http://www.w3.org/1999/02/22-rdf-syntax-ns#object has as object This is a local identifier minted within the nanopublication. https://w3id.org/np/RA3MNdcfOw.../occurrence

occurrence

This is a local identifier minted within the nanopublication. https://w3id.org/np/RA3MNdcfOw.../st30

st30

http://www.w3.org/1999/02/22-rdf-syntax-ns#subject has as subject This is a local identifier minted within the nanopublication. https://w3id.org/np/RA3MNdcfOw.../organism

organism

This is a local identifier minted within the nanopublication. https://w3id.org/np/RA3MNdcfOw.../st30

st30

http://www.w3.org/1999/02/22-rdf-syntax-ns#predicate has as predicate http://www.w3.org/2002/07/owl#sameAs

sameAs

This is a local identifier minted within the nanopublication. https://w3id.org/np/RA3MNdcfOw.../st30

st30

http://www.w3.org/1999/02/22-rdf-syntax-ns#object has as object This is a local identifier minted within the nanopublication. https://w3id.org/np/RA3MNdcfOw.../organismAlt

organismAlt

This is a local identifier minted within the nanopublication. https://w3id.org/np/RA3MNdcfOw.../st80

st80

http://www.w3.org/1999/02/22-rdf-syntax-ns#subject has as subject This is a local identifier minted within the nanopublication. https://w3id.org/np/RA3MNdcfOw.../association

association

This is a local identifier minted within the nanopublication. https://w3id.org/np/RA3MNdcfOw.../st80

st80

http://www.w3.org/1999/02/22-rdf-syntax-ns#predicate has as predicate http://www.w3.org/2003/01/geo/wgs84_pos#location

location

This is a local identifier minted within the nanopublication. https://w3id.org/np/RA3MNdcfOw.../st80

st80

http://www.w3.org/1999/02/22-rdf-syntax-ns#object has as object This is a local identifier minted within the nanopublication. https://w3id.org/np/RA3MNdcfOw.../location

location

This is a local identifier minted within the nanopublication. https://w3id.org/np/RA3MNdcfOw.../st81

st81

http://www.w3.org/1999/02/22-rdf-syntax-ns#subject has as subject This is a local identifier minted within the nanopublication. https://w3id.org/np/RA3MNdcfOw.../association

association

This is a local identifier minted within the nanopublication. https://w3id.org/np/RA3MNdcfOw.../st81

st81

http://www.w3.org/1999/02/22-rdf-syntax-ns#predicate has as predicate https://w3id.org/kpxl/biodiv/terms/hasLocationCoordinates

hasLocationCoordinates

This is a local identifier minted within the nanopublication. https://w3id.org/np/RA3MNdcfOw.../st81

st81

http://www.w3.org/1999/02/22-rdf-syntax-ns#object has as object This is a local identifier minted within the nanopublication. https://w3id.org/np/RA3MNdcfOw.../coordinates

coordinates

This is a local identifier minted within the nanopublication. https://w3id.org/np/RA3MNdcfOw.../st82

st82

http://www.w3.org/1999/02/22-rdf-syntax-ns#subject has as subject This is a local identifier minted within the nanopublication. https://w3id.org/np/RA3MNdcfOw.../association

association

This is a local identifier minted within the nanopublication. https://w3id.org/np/RA3MNdcfOw.../st82

st82

http://www.w3.org/1999/02/22-rdf-syntax-ns#predicate has as predicate https://w3id.org/biolink/vocab/timepoint

timepoint

This is a local identifier minted within the nanopublication. https://w3id.org/np/RA3MNdcfOw.../st82

st82

http://www.w3.org/1999/02/22-rdf-syntax-ns#object has as object This is a local identifier minted within the nanopublication. https://w3id.org/np/RA3MNdcfOw.../timepoint

timepoint

This is a local identifier minted within the nanopublication. https://w3id.org/np/RA3MNdcfOw.../st83

st83

http://www.w3.org/1999/02/22-rdf-syntax-ns#subject has as subject This is a local identifier minted within the nanopublication. https://w3id.org/np/RA3MNdcfOw.../association

association

This is a local identifier minted within the nanopublication. https://w3id.org/np/RA3MNdcfOw.../st83

st83

http://www.w3.org/1999/02/22-rdf-syntax-ns#predicate has as predicate https://w3id.org/kpxl/biodiv/terms/hasSampleType

hasSampleType

This is a local identifier minted within the nanopublication. https://w3id.org/np/RA3MNdcfOw.../st83

st83

http://www.w3.org/1999/02/22-rdf-syntax-ns#object has as object This is a local identifier minted within the nanopublication. https://w3id.org/np/RA3MNdcfOw.../sampleType

sampleType

This is a local identifier minted within the nanopublication. https://w3id.org/np/RA3MNdcfOw.../st85

st85

http://www.w3.org/1999/02/22-rdf-syntax-ns#subject has as subject This is a local identifier minted within the nanopublication. https://w3id.org/np/RA3MNdcfOw.../association

association

This is a local identifier minted within the nanopublication. https://w3id.org/np/RA3MNdcfOw.../st85

st85

http://www.w3.org/1999/02/22-rdf-syntax-ns#predicate has as predicate https://w3id.org/biolink/vocab/object

object

This is a local identifier minted within the nanopublication. https://w3id.org/np/RA3MNdcfOw.../st85

st85

http://www.w3.org/1999/02/22-rdf-syntax-ns#object has as object This is a local identifier minted within the nanopublication. https://w3id.org/np/RA3MNdcfOw.../nucleotidesequence

nucleotidesequence

This is a local identifier minted within the nanopublication. https://w3id.org/np/RA3MNdcfOw.../st86

st86

http://www.w3.org/1999/02/22-rdf-syntax-ns#subject has as subject This is a local identifier minted within the nanopublication. https://w3id.org/np/RA3MNdcfOw.../association

association

This is a local identifier minted within the nanopublication. https://w3id.org/np/RA3MNdcfOw.../st86

st86

http://www.w3.org/1999/02/22-rdf-syntax-ns#predicate has as predicate https://w3id.org/kpxl/biodiv/terms/hasStrainID

hasStrainID

This is a local identifier minted within the nanopublication. https://w3id.org/np/RA3MNdcfOw.../st86

st86

http://www.w3.org/1999/02/22-rdf-syntax-ns#object has as object This is a local identifier minted within the nanopublication. https://w3id.org/np/RA3MNdcfOw.../strainid

strainid

This is a local identifier minted within the nanopublication. https://w3id.org/np/RA3MNdcfOw.../st87

st87

http://www.w3.org/1999/02/22-rdf-syntax-ns#subject has as subject This is a local identifier minted within the nanopublication. https://w3id.org/np/RA3MNdcfOw.../association

association

This is a local identifier minted within the nanopublication. https://w3id.org/np/RA3MNdcfOw.../st87

st87

http://www.w3.org/1999/02/22-rdf-syntax-ns#predicate has as predicate https://w3id.org/kpxl/biodiv/terms/hasIsolationProtocol

hasIsolationProtocol

This is a local identifier minted within the nanopublication. https://w3id.org/np/RA3MNdcfOw.../st87

st87

http://www.w3.org/1999/02/22-rdf-syntax-ns#object has as object This is a local identifier minted within the nanopublication. https://w3id.org/np/RA3MNdcfOw.../isolationProtocol

isolationProtocol

This is a local identifier minted within the nanopublication. https://w3id.org/np/RA3MNdcfOw.../st90

st90

http://www.w3.org/1999/02/22-rdf-syntax-ns#subject has as subject https://w3id.org/np/o/ntemplate/ASSERTION

ASSERTION

This is a local identifier minted within the nanopublication. https://w3id.org/np/RA3MNdcfOw.../st90

st90

http://www.w3.org/1999/02/22-rdf-syntax-ns#predicate has as predicate http://www.w3.org/2000/01/rdf-schema#comment

comment

This is a local identifier minted within the nanopublication. https://w3id.org/np/RA3MNdcfOw.../st90

st90

http://www.w3.org/1999/02/22-rdf-syntax-ns#object has as object This is a local identifier minted within the nanopublication. https://w3id.org/np/RA3MNdcfOw.../comment

comment

This is the identifier for the assertion of this nanopublication. https://w3id.org/np/RA3MNdcfOw.../assertion This assertion https://w3id.org/np/o/ntemplate/hasStatement includes This is a local identifier minted within the nanopublication. https://w3id.org/np/RA3MNdcfOw.../st00

st00

st05

st09

st10

st11

st12

st20

st25

st30

st80

st81

st82

st83

st85

st86

st87

st90

This is a local identifier minted within the nanopublication. https://w3id.org/np/RA3MNdcfOw.../st12

st12

http://www.w3.org/1999/02/22-rdf-syntax-ns#type is a https://w3id.org/np/o/ntemplate/OptionalStatement

optional statement

This is a local identifier minted within the nanopublication. https://w3id.org/np/RA3MNdcfOw.../st20

st20

http://www.w3.org/1999/02/22-rdf-syntax-ns#type is a https://w3id.org/np/o/ntemplate/OptionalStatement

optional statement

This is a local identifier minted within the nanopublication. https://w3id.org/np/RA3MNdcfOw.../st25

st25

http://www.w3.org/1999/02/22-rdf-syntax-ns#type is a https://w3id.org/np/o/ntemplate/OptionalStatement

optional statement

This is a local identifier minted within the nanopublication. https://w3id.org/np/RA3MNdcfOw.../st30

st30

http://www.w3.org/1999/02/22-rdf-syntax-ns#type is a https://w3id.org/np/o/ntemplate/OptionalStatement

optional statement

This is a local identifier minted within the nanopublication. https://w3id.org/np/RA3MNdcfOw.../st30

st30

http://www.w3.org/1999/02/22-rdf-syntax-ns#type is a https://w3id.org/np/o/ntemplate/RepeatableStatement

repeatable statement

This is a local identifier minted within the nanopublication. https://w3id.org/np/RA3MNdcfOw.../st80

st80

http://www.w3.org/1999/02/22-rdf-syntax-ns#type is a https://w3id.org/np/o/ntemplate/OptionalStatement

optional statement

This is a local identifier minted within the nanopublication. https://w3id.org/np/RA3MNdcfOw.../st81

st81

http://www.w3.org/1999/02/22-rdf-syntax-ns#type is a https://w3id.org/np/o/ntemplate/OptionalStatement

optional statement

This is a local identifier minted within the nanopublication. https://w3id.org/np/RA3MNdcfOw.../st82

st82

http://www.w3.org/1999/02/22-rdf-syntax-ns#type is a https://w3id.org/np/o/ntemplate/OptionalStatement

optional statement

This is a local identifier minted within the nanopublication. https://w3id.org/np/RA3MNdcfOw.../st83

st83

http://www.w3.org/1999/02/22-rdf-syntax-ns#type is a https://w3id.org/np/o/ntemplate/OptionalStatement

optional statement

This is a local identifier minted within the nanopublication. https://w3id.org/np/RA3MNdcfOw.../st86

st86

http://www.w3.org/1999/02/22-rdf-syntax-ns#type is a https://w3id.org/np/o/ntemplate/OptionalStatement

optional statement

This is a local identifier minted within the nanopublication. https://w3id.org/np/RA3MNdcfOw.../st86

st86

http://www.w3.org/1999/02/22-rdf-syntax-ns#type is a https://w3id.org/np/o/ntemplate/RepeatableStatement

repeatable statement

This is a local identifier minted within the nanopublication. https://w3id.org/np/RA3MNdcfOw.../st87

st87

http://www.w3.org/1999/02/22-rdf-syntax-ns#type is a https://w3id.org/np/o/ntemplate/OptionalStatement

optional statement

This is a local identifier minted within the nanopublication. https://w3id.org/np/RA3MNdcfOw.../st90

st90

http://www.w3.org/1999/02/22-rdf-syntax-ns#type is a https://w3id.org/np/o/ntemplate/OptionalStatement

optional statement

This is a local identifier minted within the nanopublication. https://w3id.org/np/RA3MNdcfOw.../association

association

http://www.w3.org/1999/02/22-rdf-syntax-ns#type is a https://w3id.org/np/o/ntemplate/IntroducedResource

Introduced resource

This is a local identifier minted within the nanopublication. https://w3id.org/np/RA3MNdcfOw.../association

association

http://www.w3.org/1999/02/22-rdf-syntax-ns#type is a https://w3id.org/np/o/ntemplate/LocalResource

Local resource

This is a local identifier minted within the nanopublication. https://w3id.org/np/RA3MNdcfOw.../comment

comment

http://www.w3.org/1999/02/22-rdf-syntax-ns#type is a https://w3id.org/np/o/ntemplate/LongLiteralPlaceholder

Long literal placeholder

This is a local identifier minted within the nanopublication. https://w3id.org/np/RA3MNdcfOw.../coordinates

coordinates

http://www.w3.org/1999/02/22-rdf-syntax-ns#type is a https://w3id.org/np/o/ntemplate/LiteralPlaceholder

Literal placeholder

This is a local identifier minted within the nanopublication. https://w3id.org/np/RA3MNdcfOw.../isolationProtocol

isolationProtocol

http://www.w3.org/1999/02/22-rdf-syntax-ns#type is a https://w3id.org/np/o/ntemplate/ExternalUriPlaceholder

External URI placeholder

This is a local identifier minted within the nanopublication. https://w3id.org/np/RA3MNdcfOw.../lifecyclestage

lifecyclestage

http://www.w3.org/1999/02/22-rdf-syntax-ns#type is a https://w3id.org/np/o/ntemplate/RestrictedChoicePlaceholder

Restricted choice placeholder

This is a local identifier minted within the nanopublication. https://w3id.org/np/RA3MNdcfOw.../location

location

http://www.w3.org/1999/02/22-rdf-syntax-ns#type is a https://w3id.org/np/o/ntemplate/ExternalUriPlaceholder

External URI placeholder

This is a local identifier minted within the nanopublication. https://w3id.org/np/RA3MNdcfOw.../nucleotidesequence

nucleotidesequence

http://www.w3.org/1999/02/22-rdf-syntax-ns#type is a https://w3id.org/np/o/ntemplate/ExternalUriPlaceholder

External URI placeholder

This is a local identifier minted within the nanopublication. https://w3id.org/np/RA3MNdcfOw.../occurrence

occurrence

http://www.w3.org/1999/02/22-rdf-syntax-ns#type is a https://w3id.org/np/o/ntemplate/ExternalUriPlaceholder

External URI placeholder

This is a local identifier minted within the nanopublication. https://w3id.org/np/RA3MNdcfOw.../organism

organism

http://www.w3.org/1999/02/22-rdf-syntax-ns#type is a https://w3id.org/np/o/ntemplate/LocalResource

Local resource

This is a local identifier minted within the nanopublication. https://w3id.org/np/RA3MNdcfOw.../organismAlt

organismAlt

http://www.w3.org/1999/02/22-rdf-syntax-ns#type is a https://w3id.org/np/o/ntemplate/ExternalUriPlaceholder

External URI placeholder

This is a local identifier minted within the nanopublication. https://w3id.org/np/RA3MNdcfOw.../relation

relation

http://www.w3.org/1999/02/22-rdf-syntax-ns#type is a https://w3id.org/np/o/ntemplate/RestrictedChoicePlaceholder

Restricted choice placeholder

This is a local identifier minted within the nanopublication. https://w3id.org/np/RA3MNdcfOw.../sampleType

sampleType

http://www.w3.org/1999/02/22-rdf-syntax-ns#type is a https://w3id.org/np/o/ntemplate/GuidedChoicePlaceholder

Guided choice placeholder

This is a local identifier minted within the nanopublication. https://w3id.org/np/RA3MNdcfOw.../strainid

strainid

http://www.w3.org/1999/02/22-rdf-syntax-ns#type is a https://w3id.org/np/o/ntemplate/LiteralPlaceholder

Literal placeholder

This is a local identifier minted within the nanopublication. https://w3id.org/np/RA3MNdcfOw.../taxon

taxon

http://www.w3.org/1999/02/22-rdf-syntax-ns#type is a https://w3id.org/np/o/ntemplate/LocalResource

Local resource

This is a local identifier minted within the nanopublication. https://w3id.org/np/RA3MNdcfOw.../taxondef

taxondef

http://www.w3.org/1999/02/22-rdf-syntax-ns#type is a https://w3id.org/np/o/ntemplate/ExternalUriPlaceholder

External URI placeholder

This is a local identifier minted within the nanopublication. https://w3id.org/np/RA3MNdcfOw.../taxonname

taxonname

http://www.w3.org/1999/02/22-rdf-syntax-ns#type is a https://w3id.org/np/o/ntemplate/GuidedChoicePlaceholder

Guided choice placeholder

This is a local identifier minted within the nanopublication. https://w3id.org/np/RA3MNdcfOw.../timepoint

timepoint

http://www.w3.org/1999/02/22-rdf-syntax-ns#type is a https://w3id.org/np/o/ntemplate/LiteralPlaceholder

Literal placeholder

This is a local identifier minted within the nanopublication. https://w3id.org/np/RA3MNdcfOw.../lifecyclestage

lifecyclestage

https://w3id.org/np/o/ntemplate/possibleValue has as possible value http://purl.obolibrary.org/obo/BTO_0000487

BTO_0000487

This is a local identifier minted within the nanopublication. https://w3id.org/np/RA3MNdcfOw.../lifecyclestage

lifecyclestage

https://w3id.org/np/o/ntemplate/possibleValue has as possible value http://purl.obolibrary.org/obo/BTO_0001171

BTO_0001171

This is a local identifier minted within the nanopublication. https://w3id.org/np/RA3MNdcfOw.../relation

relation

https://w3id.org/np/o/ntemplate/possibleValue has as possible value https://w3id.org/kpxl/biodiv/terms/hasAssembledNucleotideSequence

hasAssembledNucleotideSequence

This is a local identifier minted within the nanopublication. https://w3id.org/np/RA3MNdcfOw.../relation

relation

https://w3id.org/np/o/ntemplate/possibleValue has as possible value https://w3id.org/kpxl/biodiv/terms/hasObservedNucleotideSequence

hasObservedNucleotideSequence

This is a local identifier minted within the nanopublication. https://w3id.org/np/RA3MNdcfOw.../relation

relation

https://w3id.org/np/o/ntemplate/possibleValue has as possible value https://w3id.org/kpxl/biodiv/terms/hasSequencedNucleotideSequence

hasSequencedNucleotideSequence

This is a local identifier minted within the nanopublication. https://w3id.org/np/RA3MNdcfOw.../relation

relation

https://w3id.org/np/o/ntemplate/possibleValue has as possible value https://w3id.org/kpxl/biodiv/terms/isIdentifiedByNuceotideSequence

isIdentifiedByNuceotideSequence

This is a local identifier minted within the nanopublication. https://w3id.org/np/RA3MNdcfOw.../lifecyclestage

lifecyclestage

https://w3id.org/np/o/ntemplate/possibleValuesFrom has possible values from http://purl.org/np/RAVZS2MV-s...

RAVZS2MV-s

This is a local identifier minted within the nanopublication. https://w3id.org/np/RA3MNdcfOw.../sampleType

sampleType

https://w3id.org/np/o/ntemplate/possibleValuesFromApi has possible values from API (this is a literal)

"https://www.ebi.ac.uk/ols/api/select?ontology=uberon&q="

This is a local identifier minted within the nanopublication. https://w3id.org/np/RA3MNdcfOw.../taxonname

taxonname

https://w3id.org/np/o/ntemplate/possibleValuesFromApi has possible values from API (this is a literal)

"https://vodex.petapico.org/nidx/query?rows=100&q=label:"

This is a local identifier minted within the nanopublication. https://w3id.org/np/RA3MNdcfOw.../relation

relation

https://w3id.org/np/o/ntemplate/hasDefaultValue has the default value https://w3id.org/kpxl/biodiv/terms/hasObservedNucleotideSequence

hasObservedNucleotideSequence

http://purl.obolibrary.org/obo/BTO_0000487

BTO_0000487

http://www.w3.org/2000/01/rdf-schema#label is labeled as (this is a literal)

"fruit body"

http://purl.obolibrary.org/obo/BTO_0001171

BTO_0001171

http://www.w3.org/2000/01/rdf-schema#label is labeled as (this is a literal)

"spore"

http://www.w3.org/1999/02/22-rdf-syntax-ns#type

is a

http://www.w3.org/2000/01/rdf-schema#label is labeled as (this is a literal)

"is an instance of"

http://www.w3.org/2000/01/rdf-schema#comment

comment

http://www.w3.org/2000/01/rdf-schema#label is labeled as (this is a literal)

"has the free-text comment"

http://www.w3.org/2002/07/owl#sameAs

sameAs

http://www.w3.org/2000/01/rdf-schema#label is labeled as (this is a literal)

"is the same as"

http://www.w3.org/2003/01/geo/wgs84_pos#location

location

http://www.w3.org/2000/01/rdf-schema#label is labeled as (this is a literal)

"has the location"

https://w3id.org/biolink/vocab/object

object

http://www.w3.org/2000/01/rdf-schema#label is labeled as (this is a literal)

"links the organism to the nucleotide sequence"

https://w3id.org/biolink/vocab/predicate

predicate

http://www.w3.org/2000/01/rdf-schema#label is labeled as (this is a literal)

"refers to the relation"

https://w3id.org/biolink/vocab/subject

subject

http://www.w3.org/2000/01/rdf-schema#label is labeled as (this is a literal)

"refers to"

https://w3id.org/biolink/vocab/timepoint

timepoint

http://www.w3.org/2000/01/rdf-schema#label is labeled as (this is a literal)

"has the time stamp - points to the date and time associated with this relation or organism (e.g. date of collection); if occurrence URI is given, this is redundant and does not need to be filled in"

https://w3id.org/kpxl/biodiv/t...oNucleotideSequenceAssociation

OrganismToNucleotideSequenceAssociation

http://www.w3.org/2000/01/rdf-schema#label is labeled as (this is a literal)

"an association of an organism to a nucleotide sequence"

https://w3id.org/kpxl/biodiv/terms/hasAssembledNucleotideSequence

hasAssembledNucleotideSequence

http://www.w3.org/2000/01/rdf-schema#label is labeled as (this is a literal)

"assembled nucleotide sequence"

https://w3id.org/kpxl/biodiv/terms/hasIsolationProtocol

hasIsolationProtocol

http://www.w3.org/2000/01/rdf-schema#label is labeled as (this is a literal)

"has the isolation protocol"

https://w3id.org/kpxl/biodiv/terms/hasLifeCycleStage

hasLifeCycleStage

http://www.w3.org/2000/01/rdf-schema#label is labeled as (this is a literal)

"has the life cycle stage"

https://w3id.org/kpxl/biodiv/terms/hasLocationCoordinates

hasLocationCoordinates

http://www.w3.org/2000/01/rdf-schema#label is labeled as (this is a literal)

"has the location coordinates - points to the location coordinates associated with this relation or organism (e.g. place of collection); if occurrence URI is given, this is redundant and does not need to be filled in"

https://w3id.org/kpxl/biodiv/terms/hasObservedNucleotideSequence

hasObservedNucleotideSequence

http://www.w3.org/2000/01/rdf-schema#label is labeled as (this is a literal)

"observed nucleotide sequence"

https://w3id.org/kpxl/biodiv/terms/hasOccurrence

hasOccurrence

http://www.w3.org/2000/01/rdf-schema#label is labeled as (this is a literal)

"has the occurrence - links an organism to a record of a specific occurrence of it"

https://w3id.org/kpxl/biodiv/terms/hasSampleType

hasSampleType

http://www.w3.org/2000/01/rdf-schema#label is labeled as (this is a literal)

"has the sample type"

https://w3id.org/kpxl/biodiv/terms/hasSequencedNucleotideSequence

hasSequencedNucleotideSequence

http://www.w3.org/2000/01/rdf-schema#label is labeled as (this is a literal)

"sequenced nucleotide sequence"

https://w3id.org/kpxl/biodiv/terms/hasStrainID

hasStrainID

http://www.w3.org/2000/01/rdf-schema#label is labeled as (this is a literal)

"has the strain ID"

https://w3id.org/kpxl/biodiv/terms/hasTaxonConceptDefinition

hasTaxonConceptDefinition

http://www.w3.org/2000/01/rdf-schema#label is labeled as (this is a literal)

"is used as defined in"

https://w3id.org/kpxl/biodiv/terms/hasTaxonName

hasTaxonName

http://www.w3.org/2000/01/rdf-schema#label is labeled as (this is a literal)

"has the name - links a taxon usage to a taxon name"

https://w3id.org/kpxl/biodiv/terms/isIdentifiedByNuceotideSequence

isIdentifiedByNuceotideSequence

http://www.w3.org/2000/01/rdf-schema#label is labeled as (this is a literal)

"identified by nucleotide sequence"

This is a local identifier minted within the nanopublication. https://w3id.org/np/RA3MNdcfOw.../association

association

http://www.w3.org/2000/01/rdf-schema#label is labeled as (this is a literal)

"this association"

This is a local identifier minted within the nanopublication. https://w3id.org/np/RA3MNdcfOw.../comment

comment

http://www.w3.org/2000/01/rdf-schema#label is labeled as (this is a literal)

"short explanation related to the above statement"

This is a local identifier minted within the nanopublication. https://w3id.org/np/RA3MNdcfOw.../coordinates

coordinates

http://www.w3.org/2000/01/rdf-schema#label is labeled as (this is a literal)

"lat/long e.g. '+47.37+8.54' or with altitude '+47.37+8.54+410.5'"

This is a local identifier minted within the nanopublication. https://w3id.org/np/RA3MNdcfOw.../isolationProtocol

isolationProtocol

http://www.w3.org/2000/01/rdf-schema#label is labeled as (this is a literal)

"DOI of isolation protocol document"

This is a local identifier minted within the nanopublication. https://w3id.org/np/RA3MNdcfOw.../lifecyclestage

lifecyclestage

http://www.w3.org/2000/01/rdf-schema#label is labeled as (this is a literal)

"select the life cycle stage of the organism; leave blank if unknown"

This is a local identifier minted within the nanopublication. https://w3id.org/np/RA3MNdcfOw.../location

location

http://www.w3.org/2000/01/rdf-schema#label is labeled as (this is a literal)

"GeoNames location ID (https://sws.geonames.org/.../)"

This is a local identifier minted within the nanopublication. https://w3id.org/np/RA3MNdcfOw.../nucleotidesequence

nucleotidesequence

http://www.w3.org/2000/01/rdf-schema#label is labeled as (this is a literal)

"INSDC/Genbank # (e.g. https://www.ncbi.nlm.nih.gov/nuccore/...)"

This is a local identifier minted within the nanopublication. https://w3id.org/np/RA3MNdcfOw.../occurrence

occurrence

http://www.w3.org/2000/01/rdf-schema#label is labeled as (this is a literal)

"occurrence URI from GBIF (https://www.gbif.org/occurrence/...) or iDigBio, BOLD, PlutoF, etc."

This is a local identifier minted within the nanopublication. https://w3id.org/np/RA3MNdcfOw.../organism

organism

http://www.w3.org/2000/01/rdf-schema#label is labeled as (this is a literal)

"the organism"

This is a local identifier minted within the nanopublication. https://w3id.org/np/RA3MNdcfOw.../organismAlt

organismAlt

http://www.w3.org/2000/01/rdf-schema#label is labeled as (this is a literal)

"any existing URI identifier of organism (e.g. of digital collection specimen or observation in nature)"

This is a local identifier minted within the nanopublication. https://w3id.org/np/RA3MNdcfOw.../relation

relation

http://www.w3.org/2000/01/rdf-schema#label is labeled as (this is a literal)

"the relation between the organism and the nucleotide sequence"

This is a local identifier minted within the nanopublication. https://w3id.org/np/RA3MNdcfOw.../sampleType

sampleType

http://www.w3.org/2000/01/rdf-schema#label is labeled as (this is a literal)

"choose the type of sample"

This is a local identifier minted within the nanopublication. https://w3id.org/np/RA3MNdcfOw.../strainid

strainid

http://www.w3.org/2000/01/rdf-schema#label is labeled as (this is a literal)

"Strain ID string (e.g. DSMZ, ATCC)"

This is a local identifier minted within the nanopublication. https://w3id.org/np/RA3MNdcfOw.../taxon

taxon

http://www.w3.org/2000/01/rdf-schema#label is labeled as (this is a literal)

"the taxon concept"

This is a local identifier minted within the nanopublication. https://w3id.org/np/RA3MNdcfOw.../taxondef

taxondef

http://www.w3.org/2000/01/rdf-schema#label is labeled as (this is a literal)

"DOI (https://doi.org/...) or treatment ID (https://treatment.plazi.org/id/...)"

This is a local identifier minted within the nanopublication. https://w3id.org/np/RA3MNdcfOw.../taxonname

taxonname

http://www.w3.org/2000/01/rdf-schema#label is labeled as (this is a literal)

"search and select from list (if not found, paste identifying URI from IPNI, MycoBank, Index Fungorum, or Zoobank)"

This is a local identifier minted within the nanopublication. https://w3id.org/np/RA3MNdcfOw.../timepoint

timepoint

http://www.w3.org/2000/01/rdf-schema#label is labeled as (this is a literal)

"time expressed in XSD DateTime format, e.g. '2023-03-30T22:17:11Z'"

This is a local identifier minted within the nanopublication. https://w3id.org/np/RA3MNdcfOw.../coordinates

coordinates

https://w3id.org/np/o/ntemplate/hasRegex has regular expression (this is a literal)

"[+-][0-9]+(\.[0-9]+)?[+-][0-9]+(\.[0-9]+)?([+-][0-9]+(\.[0-9]+)?)?"

This is a local identifier minted within the nanopublication. https://w3id.org/np/RA3MNdcfOw.../isolationProtocol

isolationProtocol

https://w3id.org/np/o/ntemplate/hasRegex has regular expression (this is a literal)

"https://doi\.org/.+"

This is a local identifier minted within the nanopublication. https://w3id.org/np/RA3MNdcfOw.../location

location

https://w3id.org/np/o/ntemplate/hasRegex has regular expression (this is a literal)

"https://sws\.geonames\.org/[0-9]+/"

This is a local identifier minted within the nanopublication. https://w3id.org/np/RA3MNdcfOw.../taxondef

taxondef

https://w3id.org/np/o/ntemplate/hasRegex has regular expression (this is a literal)

"(https://doi\.org/|https://treatment\.plazi\.org/id/).+"

This is a local identifier minted within the nanopublication. https://w3id.org/np/RA3MNdcfOw.../timepoint

timepoint

https://w3id.org/np/o/ntemplate/hasRegex has regular expression (this is a literal)

"-?([1-9]\d\d\d+|0\d\d\d)-(0[1-9]|1[0-2])-(0[1-9]|[12]\d|3[01])T(([01]\d|2[0-3]):[0-5]\d:[0-5]\d(\.\d+)?|24:00:00(\.0+)?)(Z|[+-](0\d|1[0-4]):[0-5]\d)?"

This is the identifier for the assertion of this nanopublication. https://w3id.org/np/RA3MNdcfOw.../assertion The assertion above http://www.w3.org/ns/prov#wasAttributedTo is attributed to https://orcid.org/0000-0002-1267-0234

Tobias Kuhn

This is the identifier for this whole nanopublication. https://w3id.org/np/RA3MNdcfOw... This nanopublication http://www.w3.org/ns/prov#wasDerivedFrom was derived from http://purl.org/np/RACPgaoRpt...

RACPgaoRpt

This is the identifier for this whole nanopublication. https://w3id.org/np/RA3MNdcfOw... This nanopublication http://purl.org/nanopub/x/supersedes supersedes https://w3id.org/np/RAInHt3ngo...

RAInHt3ngo

This is the identifier for this whole nanopublication. https://w3id.org/np/RA3MNdcfOw... This nanopublication http://purl.org/dc/terms/creator is created by https://orcid.org/0000-0002-1267-0234

Tobias Kuhn

This is the identifier for this whole nanopublication. https://w3id.org/np/RA3MNdcfOw... This nanopublication http://purl.org/dc/terms/license is published under the license https://creativecommons.org/licenses/by/4.0/

Attribution 4.0 International (CC BY 4.0)

https://orcid.org/0000-0002-1267-0234

Tobias Kuhn

http://xmlns.com/foaf/0.1/name has the name (this is a literal)

"Tobias Kuhn"

This is the identifier for this whole nanopublication. https://w3id.org/np/RA3MNdcfOw... This nanopublication http://www.w3.org/2000/01/rdf-schema#label has the label (this is a literal)

"Expressing an association between an organism and a nucleotide sequence (extended)"

This is the identifier for this whole nanopublication. https://w3id.org/np/RA3MNdcfOw... This nanopublication date and time when the nanopublication was created http://purl.org/dc/terms/created was created on (this is a literal)

"2025-12-15T08:30:23.393Z"

(xsd:dateTime) .

This is the identifier for this whole nanopublication. https://w3id.org/np/RA3MNdcfOw... This nanopublication links to the assertion template that was used to create this nanopublication https://w3id.org/np/o/ntemplate/wasCreatedFromTemplate was created from the assertion template https://w3id.org/np/RA1XuAdO6L...

RA1XuAdO6L

This is the identifier for this whole nanopublication. https://w3id.org/np/RA3MNdcfOw... This nanopublication links to the provenance template that was used to create this nanopublication https://w3id.org/np/o/ntemplate/wasCreatedFromProvenanceTemplate was created from the provenance template http://purl.org/np/RANwQa4ICW...

RANwQa4ICW

This is the identifier for this whole nanopublication. https://w3id.org/np/RA3MNdcfOw... This nanopublication links to the publication info template that was used to create this nanopublication https://w3id.org/np/o/ntemplate/wasCreatedFromPubinfoTemplate was created from the publication info template https://w3id.org/np/RA0J4vUn_d...

RA0J4vUn_d

RARW4MsFkH

RAoTD7udB2

RAukAcWHRD

This is a local identifier minted within the nanopublication. https://w3id.org/np/RA3MNdcfOw.../sig

sig

http://purl.org/nanopub/x/hasSignatureTarget has as target This is the identifier for this whole nanopublication. https://w3id.org/np/RA3MNdcfOw... this nanopublication .

This is a local identifier minted within the nanopublication. https://w3id.org/np/RA3MNdcfOw.../sig

sig

http://purl.org/nanopub/x/hasAlgorithm has the algorithm (this is a literal)

"RSA"

This is a local identifier minted within the nanopublication. https://w3id.org/np/RA3MNdcfOw.../sig

sig

http://purl.org/nanopub/x/hasPublicKey has the public key (this is a literal)

"MIGfMA0GCSqGSIb3DQEBAQUAA4GNADCBiQKBgQD4Wj537OijfOWVtsHMznuXKISqBhtGDQZfdO6pbb4hg9EHMcUFGTLbWaPrP783PHv8HMAAPjvEkHLaOHMIknqhaIa5236lfBO3r+ljVdYBElBcLvROmwG+ZGtmPNZf7lMhI15xf5TfoaSa84AFRd5J2EXekK6PhaFQhRm1IpSYtwIDAQAB"

This is a local identifier minted within the nanopublication. https://w3id.org/np/RA3MNdcfOw.../sig

sig

http://purl.org/nanopub/x/hasSignature has the signature (this is a literal)

"DNw6VUk2xJTKXmtbMBXfN2TIze8KYkzzUoiNY2rGgEvaGRMqMgF/k8oB9KEOrzR3hHSTnrSDtlBzej3lhSAqrxoJeioxhcdr98KBXTC7lsYaIPyncX4UbyRUPBjwyv4f1i7m9sb+zPyvdZWqJ5KBmPJ5aStJeDDFzq14XJbAq3U="

This is a local identifier minted within the nanopublication. https://w3id.org/np/RA3MNdcfOw.../sig

sig

http://purl.org/nanopub/x/signedBy is signed by https://orcid.org/0000-0002-1267-0234

Tobias Kuhn

This is the identifier for this whole nanopublication. https://w3id.org/np/RA3MNdcfOw... This nanopublication http://purl.org/nanopub/x/wasCreatedAt was created at https://nanodash.knowledgepixels.com/

nanodash.knowledgepixels.com

Tobias Kuhn, 15 Dec 2025, 08:30:23 UTC

References

Nanopublication	Part	Subject	Predicate	Object	Published By	Published On
https://w3id.org/np/RAuh_vfZKs... RAuh_vfZKs	links a nanopublication to its pubinfo http://www.nanopub.org/nschema#hasPublicationInfo pubinfo	RA3MNdcfOw	https://w3id.org/np/o/ntemplate/hasLabelFromApi hasLabelFromApi	Expressing an association between an organism and a nucleotide sequence (extended) - <p>Such a nanopublication expresses an association between an organism (norma...	Tobias Kuhn	2025-12-15T08:52:52.989Z
https://w3id.org/np/RAuh_vfZKs... RAuh_vfZKs	links a nanopublication to its assertion http://www.nanopub.org/nschema#hasAssertion assertion	https://w3id.org/np/RAuh_vfZKs.../addAction addAction	https://w3id.org/kpxl/gen/terms/hasActionTemplate hasActionTemplate	RA3MNdcfOw	Tobias Kuhn	2025-12-15T08:52:52.989Z

Raw

TriG(txt), JSON-LD(txt), N-Quads(txt), XML(txt)