job-58-map_reads (explore)

job-58-map_reads

https://w3id.org/np/RAK9xz_ccnu0Xhs4vX2KtqCxX44mmSt6nq-ePLeewMrFE/job-58-map_reads

Status: Loading...

🏷 Assigned to 1 class:

https://w3id.org/np/snakemake/WorkflowJob WorkflowJob ( )

🚩 Minted in Nanopublication

Snakemake workflow metadata: RAjHDlPDghZzc9ZvQ3uJQNJ9Jd_KAYzZt7dk5PXKgjRyE Dataset comment... approve/disapprove... edit as derived nanopublication...

This is a local identifier minted within the nanopublication. https://w3id.org/np/RAK9xz_ccn.../config-1

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"samples: samples.csv ref: species: "Drosophila melanogaster" genome: "" annotation: "" accession: "GCF_000001215.4" ensembl_species: "" # e.g., "homo_sapiens" build: "" # e.g., "GRCh38" release: "" # e.g., "105" read_filter: min_length: 200 minimap2: index_opts: "" opts: "" maximum_secondary: 100 secondary_score_ratio: 1.0 samtools: samtobam_opts: "-b" bamsort_opts: "" bamindex_opts: "" bamstats_opts: "" quant: salmon_libtype: "U" deseq2: fit_type: "" design_factors: - "condition" lfc_null: 1.0 alt_hypothesis: "greaterAbs" point_width: 20 mincount: 10 alpha: 0.05 threshold_plot: 10 colormap: "Blues" figtype: "png" batch_effect: - "" isoform_analysis: FLAIR: true qscore: 1 exp_thresh: 10 col_opts: "--annotation_reliant generate --generate_map --stringent" protein_annotation: lambda: false uniref: "https://ftp.imp.fu-berlin.de/pub/lambda/index/lambda3/gen_0/uniref50_20230713.lba.gz" num_matches: 3"

This is a local identifier minted within the nanopublication. https://w3id.org/np/RAK9xz_ccn.../dataset

dataset

http://www.w3.org/1999/02/22-rdf-syntax-ns#type

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This is a local identifier minted within the nanopublication. https://w3id.org/np/RAK9xz_ccn.../dataset

dataset

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"This workflow performs differential expression analysis of RNA-seq data obtained from Oxford Nanopore long-read sequencing technology. First a transcriptome FASTA is constructed using gffread [https://github.com/gpertea/gffread]. Reads are then mapped to the transcriptome with the long-read optimized alignment tool minimap2 [https://github.com/lh3/minimap2]. Next quantification is performed using salmon [https://github.com/COMBINE-lab/salmon] before normalization and differential expression analysis are conducted by PyDESeq2 [https://github.com/owkin/PyDESeq2]. The workflow can optionally analyze splice-isoforms through integrating the FLAIR [https://github.com/BrooksLabUCSC/flair] workflow. Additionaly, NanoPlot [https://github.com/wdecoster/NanoPlot] is employed to analyze initial sequencing data and QualiMap [https://github.com/EagleGenomics-cookbooks/QualiMap] is used to evaluate mapping results."

This is a local identifier minted within the nanopublication. https://w3id.org/np/RAK9xz_ccn.../dataset

dataset

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"2026-04-17T15:19:46.851430+00:00"

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This is a local identifier minted within the nanopublication. https://w3id.org/np/RAK9xz_ccn.../dataset

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This is a local identifier minted within the nanopublication. https://w3id.org/np/RAK9xz_ccn.../workflow-configuration

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(this is a literal)

"alignment_qa"

This is a local identifier minted within the nanopublication. https://w3id.org/np/RAK9xz_ccn.../job-30-count_reads

job-30-count_reads

http://www.w3.org/1999/02/22-rdf-syntax-ns#type

type

https://w3id.org/np/snakemake/WorkflowJob

WorkflowJob

This is a local identifier minted within the nanopublication. https://w3id.org/np/RAK9xz_ccn.../job-30-count_reads

job-30-count_reads

https://w3id.org/np/snakemake/hasOutput

hasOutput

(this is a literal)

"counts/barcode12_salmon/quant.sf"

This is a local identifier minted within the nanopublication. https://w3id.org/np/RAK9xz_ccn.../job-30-count_reads

job-30-count_reads

https://w3id.org/np/snakemake/ruleName

ruleName

(this is a literal)

"count_reads"

This is a local identifier minted within the nanopublication. https://w3id.org/np/RAK9xz_ccn.../job-31-count_reads

job-31-count_reads

http://www.w3.org/1999/02/22-rdf-syntax-ns#type

type

https://w3id.org/np/snakemake/WorkflowJob

WorkflowJob

This is a local identifier minted within the nanopublication. https://w3id.org/np/RAK9xz_ccn.../job-31-count_reads

job-31-count_reads

https://w3id.org/np/snakemake/hasOutput

hasOutput

(this is a literal)

"counts/barcode13_salmon/quant.sf"

This is a local identifier minted within the nanopublication. https://w3id.org/np/RAK9xz_ccn.../job-31-count_reads

job-31-count_reads

https://w3id.org/np/snakemake/ruleName

ruleName

(this is a literal)

"count_reads"

This is a local identifier minted within the nanopublication. https://w3id.org/np/RAK9xz_ccn.../job-32-count_reads

job-32-count_reads

http://www.w3.org/1999/02/22-rdf-syntax-ns#type

type

https://w3id.org/np/snakemake/WorkflowJob

WorkflowJob

This is a local identifier minted within the nanopublication. https://w3id.org/np/RAK9xz_ccn.../job-32-count_reads

job-32-count_reads

https://w3id.org/np/snakemake/hasOutput

hasOutput

(this is a literal)

"counts/barcode15_salmon/quant.sf"

This is a local identifier minted within the nanopublication. https://w3id.org/np/RAK9xz_ccn.../job-32-count_reads

job-32-count_reads

https://w3id.org/np/snakemake/ruleName

ruleName

(this is a literal)

"count_reads"

This is a local identifier minted within the nanopublication. https://w3id.org/np/RAK9xz_ccn.../job-33-count_reads

job-33-count_reads

http://www.w3.org/1999/02/22-rdf-syntax-ns#type

type

https://w3id.org/np/snakemake/WorkflowJob

WorkflowJob

This is a local identifier minted within the nanopublication. https://w3id.org/np/RAK9xz_ccn.../job-33-count_reads

job-33-count_reads

https://w3id.org/np/snakemake/hasOutput

hasOutput

(this is a literal)

"counts/barcode16_salmon/quant.sf"

This is a local identifier minted within the nanopublication. https://w3id.org/np/RAK9xz_ccn.../job-33-count_reads

job-33-count_reads

https://w3id.org/np/snakemake/ruleName

ruleName

(this is a literal)

"count_reads"

This is a local identifier minted within the nanopublication. https://w3id.org/np/RAK9xz_ccn.../job-34-deseq2

job-34-deseq2

http://www.w3.org/1999/02/22-rdf-syntax-ns#type

type

https://w3id.org/np/snakemake/WorkflowJob

WorkflowJob

This is a local identifier minted within the nanopublication. https://w3id.org/np/RAK9xz_ccn.../job-34-deseq2

job-34-deseq2

https://w3id.org/np/snakemake/hasOutput

hasOutput

(this is a literal)

"de_analysis/condition_wt_vs_mt_MA_plot.svg"

This is a local identifier minted within the nanopublication. https://w3id.org/np/RAK9xz_ccn.../job-34-deseq2

job-34-deseq2

https://w3id.org/np/snakemake/hasOutput

hasOutput

(this is a literal)

"de_analysis/condition_wt_vs_mt_count_heatmap.svg"

This is a local identifier minted within the nanopublication. https://w3id.org/np/RAK9xz_ccn.../job-34-deseq2

job-34-deseq2

https://w3id.org/np/snakemake/hasOutput

hasOutput

(this is a literal)

"de_analysis/condition_wt_vs_mt_dispersion_plot.svg"

This is a local identifier minted within the nanopublication. https://w3id.org/np/RAK9xz_ccn.../job-34-deseq2

job-34-deseq2

https://w3id.org/np/snakemake/hasOutput

hasOutput

(this is a literal)

"de_analysis/condition_wt_vs_mt_l2fc.tsv"

This is a local identifier minted within the nanopublication. https://w3id.org/np/RAK9xz_ccn.../job-34-deseq2

job-34-deseq2

https://w3id.org/np/snakemake/hasOutput

hasOutput

(this is a literal)

"de_analysis/condition_wt_vs_mt_sample_heatmap.svg"

This is a local identifier minted within the nanopublication. https://w3id.org/np/RAK9xz_ccn.../job-34-deseq2

job-34-deseq2

https://w3id.org/np/snakemake/hasOutput

hasOutput

(this is a literal)

"de_analysis/condition_wt_vs_mt_top_count_heatmap.svg"

This is a local identifier minted within the nanopublication. https://w3id.org/np/RAK9xz_ccn.../job-34-deseq2

job-34-deseq2

https://w3id.org/np/snakemake/ruleName

ruleName

(this is a literal)

"deseq2"

This is a local identifier minted within the nanopublication. https://w3id.org/np/RAK9xz_ccn.../job-35-deseq2_init

job-35-deseq2_init

http://www.w3.org/1999/02/22-rdf-syntax-ns#type

type

https://w3id.org/np/snakemake/WorkflowJob

WorkflowJob

This is a local identifier minted within the nanopublication. https://w3id.org/np/RAK9xz_ccn.../job-35-deseq2_init

job-35-deseq2_init

https://w3id.org/np/snakemake/hasOutput

hasOutput

(this is a literal)

"de_analysis/all.rds"

This is a local identifier minted within the nanopublication. https://w3id.org/np/RAK9xz_ccn.../job-35-deseq2_init

job-35-deseq2_init

https://w3id.org/np/snakemake/hasOutput

hasOutput

(this is a literal)

"de_analysis/normcounts.tsv"

This is a local identifier minted within the nanopublication. https://w3id.org/np/RAK9xz_ccn.../job-35-deseq2_init

job-35-deseq2_init

https://w3id.org/np/snakemake/ruleName

ruleName

(this is a literal)

"deseq2_init"

This is a local identifier minted within the nanopublication. https://w3id.org/np/RAK9xz_ccn.../job-36-download_ncbi_annotation

job-36-download_ncbi_annotation

http://www.w3.org/1999/02/22-rdf-syntax-ns#type

type

https://w3id.org/np/snakemake/WorkflowJob

WorkflowJob

This is a local identifier minted within the nanopublication. https://w3id.org/np/RAK9xz_ccn.../job-36-download_ncbi_annotation

job-36-download_ncbi_annotation

https://w3id.org/np/snakemake/hasOutput

hasOutput

(this is a literal)

"references/ncbi_dataset_annotation.zip"

This is a local identifier minted within the nanopublication. https://w3id.org/np/RAK9xz_ccn.../job-36-download_ncbi_annotation

job-36-download_ncbi_annotation

https://w3id.org/np/snakemake/ruleName

ruleName

(this is a literal)

"download_ncbi_annotation"

This is a local identifier minted within the nanopublication. https://w3id.org/np/RAK9xz_ccn.../job-37-download_ncbi_genome

job-37-download_ncbi_genome

http://www.w3.org/1999/02/22-rdf-syntax-ns#type

type

https://w3id.org/np/snakemake/WorkflowJob

WorkflowJob

This is a local identifier minted within the nanopublication. https://w3id.org/np/RAK9xz_ccn.../job-37-download_ncbi_genome

job-37-download_ncbi_genome

https://w3id.org/np/snakemake/hasOutput

hasOutput

(this is a literal)

"references/ncbi_dataset_genome.zip"

This is a local identifier minted within the nanopublication. https://w3id.org/np/RAK9xz_ccn.../job-37-download_ncbi_genome

job-37-download_ncbi_genome

https://w3id.org/np/snakemake/ruleName

ruleName

(this is a literal)

"download_ncbi_genome"

This is a local identifier minted within the nanopublication. https://w3id.org/np/RAK9xz_ccn.../job-38-filter_reads

job-38-filter_reads

http://www.w3.org/1999/02/22-rdf-syntax-ns#type

type

https://w3id.org/np/snakemake/WorkflowJob

WorkflowJob

This is a local identifier minted within the nanopublication. https://w3id.org/np/RAK9xz_ccn.../job-38-filter_reads

job-38-filter_reads

https://w3id.org/np/snakemake/hasOutput

hasOutput

(this is a literal)

"filter/barcode10_filtered.fq"

This is a local identifier minted within the nanopublication. https://w3id.org/np/RAK9xz_ccn.../job-38-filter_reads

job-38-filter_reads

https://w3id.org/np/snakemake/ruleName

ruleName

(this is a literal)

"filter_reads"

This is a local identifier minted within the nanopublication. https://w3id.org/np/RAK9xz_ccn.../job-39-filter_reads

job-39-filter_reads

http://www.w3.org/1999/02/22-rdf-syntax-ns#type

type

https://w3id.org/np/snakemake/WorkflowJob

WorkflowJob

This is a local identifier minted within the nanopublication. https://w3id.org/np/RAK9xz_ccn.../job-39-filter_reads

job-39-filter_reads

https://w3id.org/np/snakemake/hasOutput

hasOutput

(this is a literal)

"filter/barcode11_filtered.fq"

This is a local identifier minted within the nanopublication. https://w3id.org/np/RAK9xz_ccn.../job-39-filter_reads

job-39-filter_reads

https://w3id.org/np/snakemake/ruleName

ruleName

(this is a literal)

"filter_reads"

This is a local identifier minted within the nanopublication. https://w3id.org/np/RAK9xz_ccn.../job-4-alignment_qa

job-4-alignment_qa

http://www.w3.org/1999/02/22-rdf-syntax-ns#type

type

https://w3id.org/np/snakemake/WorkflowJob

WorkflowJob

This is a local identifier minted within the nanopublication. https://w3id.org/np/RAK9xz_ccn.../job-4-alignment_qa

job-4-alignment_qa

https://w3id.org/np/snakemake/hasOutput

hasOutput

(this is a literal)

"QC/qualimap/barcode13"

This is a local identifier minted within the nanopublication. https://w3id.org/np/RAK9xz_ccn.../job-4-alignment_qa

job-4-alignment_qa

https://w3id.org/np/snakemake/ruleName

ruleName

(this is a literal)

"alignment_qa"

This is a local identifier minted within the nanopublication. https://w3id.org/np/RAK9xz_ccn.../job-40-filter_reads

job-40-filter_reads

http://www.w3.org/1999/02/22-rdf-syntax-ns#type

type

https://w3id.org/np/snakemake/WorkflowJob

WorkflowJob

This is a local identifier minted within the nanopublication. https://w3id.org/np/RAK9xz_ccn.../job-40-filter_reads

job-40-filter_reads

https://w3id.org/np/snakemake/hasOutput

hasOutput

(this is a literal)

"filter/barcode12_filtered.fq"

This is a local identifier minted within the nanopublication. https://w3id.org/np/RAK9xz_ccn.../job-40-filter_reads

job-40-filter_reads

https://w3id.org/np/snakemake/ruleName

ruleName

(this is a literal)

"filter_reads"

This is a local identifier minted within the nanopublication. https://w3id.org/np/RAK9xz_ccn.../job-41-filter_reads

job-41-filter_reads

http://www.w3.org/1999/02/22-rdf-syntax-ns#type

type

https://w3id.org/np/snakemake/WorkflowJob

WorkflowJob

This is a local identifier minted within the nanopublication. https://w3id.org/np/RAK9xz_ccn.../job-41-filter_reads

job-41-filter_reads

https://w3id.org/np/snakemake/hasOutput

hasOutput

(this is a literal)

"filter/barcode13_filtered.fq"

This is a local identifier minted within the nanopublication. https://w3id.org/np/RAK9xz_ccn.../job-41-filter_reads

job-41-filter_reads

https://w3id.org/np/snakemake/ruleName

ruleName

(this is a literal)

"filter_reads"

This is a local identifier minted within the nanopublication. https://w3id.org/np/RAK9xz_ccn.../job-42-filter_reads

job-42-filter_reads

http://www.w3.org/1999/02/22-rdf-syntax-ns#type

type

https://w3id.org/np/snakemake/WorkflowJob

WorkflowJob

This is a local identifier minted within the nanopublication. https://w3id.org/np/RAK9xz_ccn.../job-42-filter_reads

job-42-filter_reads

https://w3id.org/np/snakemake/hasOutput

hasOutput

(this is a literal)

"filter/barcode15_filtered.fq"

This is a local identifier minted within the nanopublication. https://w3id.org/np/RAK9xz_ccn.../job-42-filter_reads

job-42-filter_reads

https://w3id.org/np/snakemake/ruleName

ruleName

(this is a literal)

"filter_reads"

This is a local identifier minted within the nanopublication. https://w3id.org/np/RAK9xz_ccn.../job-43-filter_reads

job-43-filter_reads

http://www.w3.org/1999/02/22-rdf-syntax-ns#type

type

https://w3id.org/np/snakemake/WorkflowJob

WorkflowJob

This is a local identifier minted within the nanopublication. https://w3id.org/np/RAK9xz_ccn.../job-43-filter_reads

job-43-filter_reads

https://w3id.org/np/snakemake/hasOutput

hasOutput

(this is a literal)

"filter/barcode16_filtered.fq"

This is a local identifier minted within the nanopublication. https://w3id.org/np/RAK9xz_ccn.../job-43-filter_reads

job-43-filter_reads

https://w3id.org/np/snakemake/ruleName

ruleName

(this is a literal)

"filter_reads"

This is a local identifier minted within the nanopublication. https://w3id.org/np/RAK9xz_ccn.../job-44-flair_align

job-44-flair_align

http://www.w3.org/1999/02/22-rdf-syntax-ns#type

type

https://w3id.org/np/snakemake/WorkflowJob

WorkflowJob

This is a local identifier minted within the nanopublication. https://w3id.org/np/RAK9xz_ccn.../job-44-flair_align

job-44-flair_align

https://w3id.org/np/snakemake/hasOutput

hasOutput

(this is a literal)

"iso_analysis/align/flair.bam"

This is a local identifier minted within the nanopublication. https://w3id.org/np/RAK9xz_ccn.../job-44-flair_align

job-44-flair_align

https://w3id.org/np/snakemake/hasOutput

hasOutput

(this is a literal)

"iso_analysis/align/flair.bam.bai"

This is a local identifier minted within the nanopublication. https://w3id.org/np/RAK9xz_ccn.../job-44-flair_align

job-44-flair_align

https://w3id.org/np/snakemake/hasOutput

hasOutput

(this is a literal)

"iso_analysis/align/flair.bed"

This is a local identifier minted within the nanopublication. https://w3id.org/np/RAK9xz_ccn.../job-44-flair_align

job-44-flair_align

https://w3id.org/np/snakemake/ruleName

ruleName

(this is a literal)

"flair_align"

This is a local identifier minted within the nanopublication. https://w3id.org/np/RAK9xz_ccn.../job-45-flair_collapse

job-45-flair_collapse

http://www.w3.org/1999/02/22-rdf-syntax-ns#type

type

https://w3id.org/np/snakemake/WorkflowJob

WorkflowJob

This is a local identifier minted within the nanopublication. https://w3id.org/np/RAK9xz_ccn.../job-45-flair_collapse

job-45-flair_collapse

https://w3id.org/np/snakemake/hasOutput

hasOutput

(this is a literal)

"iso_analysis/collapse/flair.isoforms.bed"

This is a local identifier minted within the nanopublication. https://w3id.org/np/RAK9xz_ccn.../job-45-flair_collapse

job-45-flair_collapse

https://w3id.org/np/snakemake/hasOutput

hasOutput

(this is a literal)

"iso_analysis/collapse/flair.isoforms.fa"

This is a local identifier minted within the nanopublication. https://w3id.org/np/RAK9xz_ccn.../job-45-flair_collapse

job-45-flair_collapse

https://w3id.org/np/snakemake/ruleName

ruleName

(this is a literal)

"flair_collapse"

This is a local identifier minted within the nanopublication. https://w3id.org/np/RAK9xz_ccn.../job-46-flair_correct

job-46-flair_correct

http://www.w3.org/1999/02/22-rdf-syntax-ns#type

type

https://w3id.org/np/snakemake/WorkflowJob

WorkflowJob

This is a local identifier minted within the nanopublication. https://w3id.org/np/RAK9xz_ccn.../job-46-flair_correct

job-46-flair_correct

https://w3id.org/np/snakemake/hasOutput

hasOutput

(this is a literal)

"iso_analysis/align/flair_all_corrected.bed"

This is a local identifier minted within the nanopublication. https://w3id.org/np/RAK9xz_ccn.../job-46-flair_correct

job-46-flair_correct

https://w3id.org/np/snakemake/ruleName

ruleName

(this is a literal)

"flair_correct"

This is a local identifier minted within the nanopublication. https://w3id.org/np/RAK9xz_ccn.../job-47-flair_diffexp

job-47-flair_diffexp

http://www.w3.org/1999/02/22-rdf-syntax-ns#type

type

https://w3id.org/np/snakemake/WorkflowJob

WorkflowJob

This is a local identifier minted within the nanopublication. https://w3id.org/np/RAK9xz_ccn.../job-47-flair_diffexp

job-47-flair_diffexp

https://w3id.org/np/snakemake/hasOutput

hasOutput

(this is a literal)

"iso_analysis/diffexp/genes_deseq2_QCplots_wt_v_mt.pdf"

This is a local identifier minted within the nanopublication. https://w3id.org/np/RAK9xz_ccn.../job-47-flair_diffexp

job-47-flair_diffexp

https://w3id.org/np/snakemake/hasOutput

hasOutput

(this is a literal)

"iso_analysis/diffexp/genes_deseq2_wt_v_mt.tsv"

This is a local identifier minted within the nanopublication. https://w3id.org/np/RAK9xz_ccn.../job-47-flair_diffexp

job-47-flair_diffexp

https://w3id.org/np/snakemake/hasOutput

hasOutput

(this is a literal)

"iso_analysis/diffexp/isoforms_deseq2_QCplots_wt_v_mt.pdf"

This is a local identifier minted within the nanopublication. https://w3id.org/np/RAK9xz_ccn.../job-47-flair_diffexp

job-47-flair_diffexp

https://w3id.org/np/snakemake/hasOutput

hasOutput

(this is a literal)

"iso_analysis/diffexp/isoforms_deseq2_wt_v_mt.tsv"

This is a local identifier minted within the nanopublication. https://w3id.org/np/RAK9xz_ccn.../job-47-flair_diffexp

job-47-flair_diffexp

https://w3id.org/np/snakemake/hasOutput

hasOutput

(this is a literal)

"iso_analysis/diffexp/isoforms_drimseq_wt_v_mt.tsv"

This is a local identifier minted within the nanopublication. https://w3id.org/np/RAK9xz_ccn.../job-47-flair_diffexp

job-47-flair_diffexp

https://w3id.org/np/snakemake/ruleName

ruleName

(this is a literal)

"flair_diffexp"

This is a local identifier minted within the nanopublication. https://w3id.org/np/RAK9xz_ccn.../job-48-flair_plot_isoforms

job-48-flair_plot_isoforms

http://www.w3.org/1999/02/22-rdf-syntax-ns#type

type

https://w3id.org/np/snakemake/WorkflowJob

WorkflowJob

This is a local identifier minted within the nanopublication. https://w3id.org/np/RAK9xz_ccn.../job-48-flair_plot_isoforms

job-48-flair_plot_isoforms

https://w3id.org/np/snakemake/hasOutput

hasOutput

(this is a literal)

"iso_analysis/plots"

This is a local identifier minted within the nanopublication. https://w3id.org/np/RAK9xz_ccn.../job-48-flair_plot_isoforms

job-48-flair_plot_isoforms

https://w3id.org/np/snakemake/ruleName

ruleName

(this is a literal)

"flair_plot_isoforms"

This is a local identifier minted within the nanopublication. https://w3id.org/np/RAK9xz_ccn.../job-49-flair_quantify

job-49-flair_quantify

http://www.w3.org/1999/02/22-rdf-syntax-ns#type

type

https://w3id.org/np/snakemake/WorkflowJob

WorkflowJob

This is a local identifier minted within the nanopublication. https://w3id.org/np/RAK9xz_ccn.../job-49-flair_quantify

job-49-flair_quantify

https://w3id.org/np/snakemake/hasOutput

hasOutput

(this is a literal)

"iso_analysis/quantify/flair.counts.tsv"

This is a local identifier minted within the nanopublication. https://w3id.org/np/RAK9xz_ccn.../job-49-flair_quantify

job-49-flair_quantify

https://w3id.org/np/snakemake/ruleName

ruleName

(this is a literal)

"flair_quantify"

This is a local identifier minted within the nanopublication. https://w3id.org/np/RAK9xz_ccn.../job-5-alignment_qa

job-5-alignment_qa

http://www.w3.org/1999/02/22-rdf-syntax-ns#type

type

https://w3id.org/np/snakemake/WorkflowJob

WorkflowJob

This is a local identifier minted within the nanopublication. https://w3id.org/np/RAK9xz_ccn.../job-5-alignment_qa

job-5-alignment_qa

https://w3id.org/np/snakemake/hasOutput

hasOutput

(this is a literal)

"QC/qualimap/barcode15"

This is a local identifier minted within the nanopublication. https://w3id.org/np/RAK9xz_ccn.../job-5-alignment_qa

job-5-alignment_qa

https://w3id.org/np/snakemake/ruleName

ruleName

(this is a literal)

"alignment_qa"

This is a local identifier minted within the nanopublication. https://w3id.org/np/RAK9xz_ccn.../job-50-genome_to_transcriptome

job-50-genome_to_transcriptome

http://www.w3.org/1999/02/22-rdf-syntax-ns#type

type

https://w3id.org/np/snakemake/WorkflowJob

WorkflowJob

This is a local identifier minted within the nanopublication. https://w3id.org/np/RAK9xz_ccn.../job-50-genome_to_transcriptome

job-50-genome_to_transcriptome

https://w3id.org/np/snakemake/hasOutput

hasOutput

(this is a literal)

"references/genomic.fa.fai"

This is a local identifier minted within the nanopublication. https://w3id.org/np/RAK9xz_ccn.../job-50-genome_to_transcriptome

job-50-genome_to_transcriptome

https://w3id.org/np/snakemake/hasOutput

hasOutput

(this is a literal)

"transcriptome/transcriptome.fa"

This is a local identifier minted within the nanopublication. https://w3id.org/np/RAK9xz_ccn.../job-50-genome_to_transcriptome

job-50-genome_to_transcriptome

https://w3id.org/np/snakemake/ruleName

ruleName

(this is a literal)

"genome_to_transcriptome"

This is a local identifier minted within the nanopublication. https://w3id.org/np/RAK9xz_ccn.../job-51-get_annotation

job-51-get_annotation

http://www.w3.org/1999/02/22-rdf-syntax-ns#type

type

https://w3id.org/np/snakemake/WorkflowJob

WorkflowJob

This is a local identifier minted within the nanopublication. https://w3id.org/np/RAK9xz_ccn.../job-51-get_annotation

job-51-get_annotation

https://w3id.org/np/snakemake/hasOutput

hasOutput

(this is a literal)

"references/genomic.gff"

This is a local identifier minted within the nanopublication. https://w3id.org/np/RAK9xz_ccn.../job-51-get_annotation

job-51-get_annotation

https://w3id.org/np/snakemake/ruleName

ruleName

(this is a literal)

"get_annotation"

This is a local identifier minted within the nanopublication. https://w3id.org/np/RAK9xz_ccn.../job-52-get_genome

job-52-get_genome

http://www.w3.org/1999/02/22-rdf-syntax-ns#type

type

https://w3id.org/np/snakemake/WorkflowJob

WorkflowJob

This is a local identifier minted within the nanopublication. https://w3id.org/np/RAK9xz_ccn.../job-52-get_genome

job-52-get_genome

https://w3id.org/np/snakemake/hasOutput

hasOutput

(this is a literal)

"references/genomic.fa"

This is a local identifier minted within the nanopublication. https://w3id.org/np/RAK9xz_ccn.../job-52-get_genome

job-52-get_genome

https://w3id.org/np/snakemake/ruleName

ruleName

(this is a literal)

"get_genome"

This is a local identifier minted within the nanopublication. https://w3id.org/np/RAK9xz_ccn.../job-53-gff_to_gtf

job-53-gff_to_gtf

http://www.w3.org/1999/02/22-rdf-syntax-ns#type

type

https://w3id.org/np/snakemake/WorkflowJob

WorkflowJob

This is a local identifier minted within the nanopublication. https://w3id.org/np/RAK9xz_ccn.../job-53-gff_to_gtf

job-53-gff_to_gtf

https://w3id.org/np/snakemake/hasOutput

hasOutput

(this is a literal)

"references/standardized_genomic.gtf"

This is a local identifier minted within the nanopublication. https://w3id.org/np/RAK9xz_ccn.../job-53-gff_to_gtf

job-53-gff_to_gtf

https://w3id.org/np/snakemake/ruleName

ruleName

(this is a literal)

"gff_to_gtf"

This is a local identifier minted within the nanopublication. https://w3id.org/np/RAK9xz_ccn.../job-54-iso_analysis_report

job-54-iso_analysis_report

http://www.w3.org/1999/02/22-rdf-syntax-ns#type

type

https://w3id.org/np/snakemake/WorkflowJob

WorkflowJob

This is a local identifier minted within the nanopublication. https://w3id.org/np/RAK9xz_ccn.../job-54-iso_analysis_report

job-54-iso_analysis_report

https://w3id.org/np/snakemake/hasOutput

hasOutput

(this is a literal)

"iso_analysis/report/isoforms"

This is a local identifier minted within the nanopublication. https://w3id.org/np/RAK9xz_ccn.../job-54-iso_analysis_report

job-54-iso_analysis_report

https://w3id.org/np/snakemake/hasOutput

hasOutput

(this is a literal)

"iso_analysis/report/usage"

This is a local identifier minted within the nanopublication. https://w3id.org/np/RAK9xz_ccn.../job-54-iso_analysis_report

job-54-iso_analysis_report

https://w3id.org/np/snakemake/ruleName

ruleName

(this is a literal)

"iso_analysis_report"

This is a local identifier minted within the nanopublication. https://w3id.org/np/RAK9xz_ccn.../job-55-map_reads

job-55-map_reads

http://www.w3.org/1999/02/22-rdf-syntax-ns#type

type

https://w3id.org/np/snakemake/WorkflowJob

WorkflowJob

This is a local identifier minted within the nanopublication. https://w3id.org/np/RAK9xz_ccn.../job-55-map_reads

job-55-map_reads

https://w3id.org/np/snakemake/hasOutput

hasOutput

(this is a literal)

"alignments/barcode10.sam"

This is a local identifier minted within the nanopublication. https://w3id.org/np/RAK9xz_ccn.../job-55-map_reads

job-55-map_reads

https://w3id.org/np/snakemake/ruleName

ruleName

(this is a literal)

"map_reads"

This is a local identifier minted within the nanopublication. https://w3id.org/np/RAK9xz_ccn.../job-56-map_reads

job-56-map_reads

http://www.w3.org/1999/02/22-rdf-syntax-ns#type

type

https://w3id.org/np/snakemake/WorkflowJob

WorkflowJob

This is a local identifier minted within the nanopublication. https://w3id.org/np/RAK9xz_ccn.../job-56-map_reads

job-56-map_reads

https://w3id.org/np/snakemake/hasOutput

hasOutput

(this is a literal)

"alignments/barcode11.sam"

This is a local identifier minted within the nanopublication. https://w3id.org/np/RAK9xz_ccn.../job-56-map_reads

job-56-map_reads

https://w3id.org/np/snakemake/ruleName

ruleName

(this is a literal)

"map_reads"

This is a local identifier minted within the nanopublication. https://w3id.org/np/RAK9xz_ccn.../job-57-map_reads

job-57-map_reads

http://www.w3.org/1999/02/22-rdf-syntax-ns#type

type

https://w3id.org/np/snakemake/WorkflowJob

WorkflowJob

This is a local identifier minted within the nanopublication. https://w3id.org/np/RAK9xz_ccn.../job-57-map_reads

job-57-map_reads

https://w3id.org/np/snakemake/hasOutput

hasOutput

(this is a literal)

"alignments/barcode12.sam"

This is a local identifier minted within the nanopublication. https://w3id.org/np/RAK9xz_ccn.../job-57-map_reads

job-57-map_reads

https://w3id.org/np/snakemake/ruleName

ruleName

(this is a literal)

"map_reads"

This is a local identifier minted within the nanopublication. https://w3id.org/np/RAK9xz_ccn.../job-58-map_reads

job-58-map_reads

http://www.w3.org/1999/02/22-rdf-syntax-ns#type

type

https://w3id.org/np/snakemake/WorkflowJob

WorkflowJob

This is a local identifier minted within the nanopublication. https://w3id.org/np/RAK9xz_ccn.../job-58-map_reads

job-58-map_reads

https://w3id.org/np/snakemake/hasOutput

hasOutput

(this is a literal)

"alignments/barcode13.sam"

This is a local identifier minted within the nanopublication. https://w3id.org/np/RAK9xz_ccn.../job-58-map_reads

job-58-map_reads

https://w3id.org/np/snakemake/ruleName

ruleName

(this is a literal)

"map_reads"

This is a local identifier minted within the nanopublication. https://w3id.org/np/RAK9xz_ccn.../job-59-map_reads

job-59-map_reads

http://www.w3.org/1999/02/22-rdf-syntax-ns#type

type

https://w3id.org/np/snakemake/WorkflowJob

WorkflowJob

This is a local identifier minted within the nanopublication. https://w3id.org/np/RAK9xz_ccn.../job-59-map_reads

job-59-map_reads

https://w3id.org/np/snakemake/hasOutput

hasOutput

(this is a literal)

"alignments/barcode15.sam"

This is a local identifier minted within the nanopublication. https://w3id.org/np/RAK9xz_ccn.../job-59-map_reads

job-59-map_reads

https://w3id.org/np/snakemake/ruleName

ruleName

(this is a literal)

"map_reads"

This is a local identifier minted within the nanopublication. https://w3id.org/np/RAK9xz_ccn.../job-6-alignment_qa

job-6-alignment_qa

http://www.w3.org/1999/02/22-rdf-syntax-ns#type

type

https://w3id.org/np/snakemake/WorkflowJob

WorkflowJob

This is a local identifier minted within the nanopublication. https://w3id.org/np/RAK9xz_ccn.../job-6-alignment_qa

job-6-alignment_qa

https://w3id.org/np/snakemake/hasOutput

hasOutput

(this is a literal)

"QC/qualimap/barcode16"

This is a local identifier minted within the nanopublication. https://w3id.org/np/RAK9xz_ccn.../job-6-alignment_qa

job-6-alignment_qa

https://w3id.org/np/snakemake/ruleName

ruleName

(this is a literal)

"alignment_qa"

This is a local identifier minted within the nanopublication. https://w3id.org/np/RAK9xz_ccn.../job-60-map_reads

job-60-map_reads

http://www.w3.org/1999/02/22-rdf-syntax-ns#type

type

https://w3id.org/np/snakemake/WorkflowJob

WorkflowJob

This is a local identifier minted within the nanopublication. https://w3id.org/np/RAK9xz_ccn.../job-60-map_reads

job-60-map_reads

https://w3id.org/np/snakemake/hasOutput

hasOutput

(this is a literal)

"alignments/barcode16.sam"

This is a local identifier minted within the nanopublication. https://w3id.org/np/RAK9xz_ccn.../job-60-map_reads

job-60-map_reads

https://w3id.org/np/snakemake/ruleName

ruleName

(this is a literal)

"map_reads"

This is a local identifier minted within the nanopublication. https://w3id.org/np/RAK9xz_ccn.../job-61-merge_read_counts

job-61-merge_read_counts

http://www.w3.org/1999/02/22-rdf-syntax-ns#type

type

https://w3id.org/np/snakemake/WorkflowJob

WorkflowJob

This is a local identifier minted within the nanopublication. https://w3id.org/np/RAK9xz_ccn.../job-61-merge_read_counts

job-61-merge_read_counts

https://w3id.org/np/snakemake/hasOutput

hasOutput

(this is a literal)

"merged/all_counts.tsv"

This is a local identifier minted within the nanopublication. https://w3id.org/np/RAK9xz_ccn.../job-61-merge_read_counts

job-61-merge_read_counts

https://w3id.org/np/snakemake/ruleName

ruleName

(this is a literal)

"merge_read_counts"

This is a local identifier minted within the nanopublication. https://w3id.org/np/RAK9xz_ccn.../job-62-reads_manifest

job-62-reads_manifest

http://www.w3.org/1999/02/22-rdf-syntax-ns#type

type

https://w3id.org/np/snakemake/WorkflowJob

WorkflowJob

This is a local identifier minted within the nanopublication. https://w3id.org/np/RAK9xz_ccn.../job-62-reads_manifest

job-62-reads_manifest

https://w3id.org/np/snakemake/hasOutput

hasOutput

(this is a literal)

"iso_analysis/reads_manifest.tsv"

This is a local identifier minted within the nanopublication. https://w3id.org/np/RAK9xz_ccn.../job-62-reads_manifest

job-62-reads_manifest

https://w3id.org/np/snakemake/ruleName

ruleName

(this is a literal)

"reads_manifest"

This is a local identifier minted within the nanopublication. https://w3id.org/np/RAK9xz_ccn.../job-63-sam_to_bam

job-63-sam_to_bam

http://www.w3.org/1999/02/22-rdf-syntax-ns#type

type

https://w3id.org/np/snakemake/WorkflowJob

WorkflowJob

This is a local identifier minted within the nanopublication. https://w3id.org/np/RAK9xz_ccn.../job-63-sam_to_bam

job-63-sam_to_bam

https://w3id.org/np/snakemake/hasOutput

hasOutput

(this is a literal)

"alignments/barcode10.bam"

This is a local identifier minted within the nanopublication. https://w3id.org/np/RAK9xz_ccn.../job-63-sam_to_bam

job-63-sam_to_bam

https://w3id.org/np/snakemake/ruleName

ruleName

(this is a literal)

"sam_to_bam"

This is a local identifier minted within the nanopublication. https://w3id.org/np/RAK9xz_ccn.../job-64-sam_to_bam

job-64-sam_to_bam

http://www.w3.org/1999/02/22-rdf-syntax-ns#type

type

https://w3id.org/np/snakemake/WorkflowJob

WorkflowJob

This is a local identifier minted within the nanopublication. https://w3id.org/np/RAK9xz_ccn.../job-64-sam_to_bam

job-64-sam_to_bam

https://w3id.org/np/snakemake/hasOutput

hasOutput

(this is a literal)

"alignments/barcode11.bam"

This is a local identifier minted within the nanopublication. https://w3id.org/np/RAK9xz_ccn.../job-64-sam_to_bam

job-64-sam_to_bam

https://w3id.org/np/snakemake/ruleName

ruleName

(this is a literal)

"sam_to_bam"

This is a local identifier minted within the nanopublication. https://w3id.org/np/RAK9xz_ccn.../job-65-sam_to_bam

job-65-sam_to_bam

http://www.w3.org/1999/02/22-rdf-syntax-ns#type

type

https://w3id.org/np/snakemake/WorkflowJob

WorkflowJob

This is a local identifier minted within the nanopublication. https://w3id.org/np/RAK9xz_ccn.../job-65-sam_to_bam

job-65-sam_to_bam

https://w3id.org/np/snakemake/hasOutput

hasOutput

(this is a literal)

"alignments/barcode12.bam"

This is a local identifier minted within the nanopublication. https://w3id.org/np/RAK9xz_ccn.../job-65-sam_to_bam

job-65-sam_to_bam

https://w3id.org/np/snakemake/ruleName

ruleName

(this is a literal)

"sam_to_bam"

This is a local identifier minted within the nanopublication. https://w3id.org/np/RAK9xz_ccn.../job-66-sam_to_bam

job-66-sam_to_bam

http://www.w3.org/1999/02/22-rdf-syntax-ns#type

type

https://w3id.org/np/snakemake/WorkflowJob

WorkflowJob

This is a local identifier minted within the nanopublication. https://w3id.org/np/RAK9xz_ccn.../job-66-sam_to_bam

job-66-sam_to_bam

https://w3id.org/np/snakemake/hasOutput

hasOutput

(this is a literal)

"alignments/barcode13.bam"

This is a local identifier minted within the nanopublication. https://w3id.org/np/RAK9xz_ccn.../job-66-sam_to_bam

job-66-sam_to_bam

https://w3id.org/np/snakemake/ruleName

ruleName

(this is a literal)

"sam_to_bam"

This is a local identifier minted within the nanopublication. https://w3id.org/np/RAK9xz_ccn.../job-67-sam_to_bam

job-67-sam_to_bam

http://www.w3.org/1999/02/22-rdf-syntax-ns#type

type

https://w3id.org/np/snakemake/WorkflowJob

WorkflowJob

This is a local identifier minted within the nanopublication. https://w3id.org/np/RAK9xz_ccn.../job-67-sam_to_bam

job-67-sam_to_bam

https://w3id.org/np/snakemake/hasOutput

hasOutput

(this is a literal)

"alignments/barcode15.bam"

This is a local identifier minted within the nanopublication. https://w3id.org/np/RAK9xz_ccn.../job-67-sam_to_bam

job-67-sam_to_bam

https://w3id.org/np/snakemake/ruleName

ruleName

(this is a literal)

"sam_to_bam"

This is a local identifier minted within the nanopublication. https://w3id.org/np/RAK9xz_ccn.../job-68-sam_to_bam

job-68-sam_to_bam

http://www.w3.org/1999/02/22-rdf-syntax-ns#type

type

https://w3id.org/np/snakemake/WorkflowJob

WorkflowJob

This is a local identifier minted within the nanopublication. https://w3id.org/np/RAK9xz_ccn.../job-68-sam_to_bam

job-68-sam_to_bam

https://w3id.org/np/snakemake/hasOutput

hasOutput

(this is a literal)

"alignments/barcode16.bam"

This is a local identifier minted within the nanopublication. https://w3id.org/np/RAK9xz_ccn.../job-68-sam_to_bam

job-68-sam_to_bam

https://w3id.org/np/snakemake/ruleName

ruleName

(this is a literal)

"sam_to_bam"

This is a local identifier minted within the nanopublication. https://w3id.org/np/RAK9xz_ccn.../job-69-sample_qa_plot

job-69-sample_qa_plot

http://www.w3.org/1999/02/22-rdf-syntax-ns#type

type

https://w3id.org/np/snakemake/WorkflowJob

WorkflowJob

This is a local identifier minted within the nanopublication. https://w3id.org/np/RAK9xz_ccn.../job-69-sample_qa_plot

job-69-sample_qa_plot

https://w3id.org/np/snakemake/hasOutput

hasOutput

(this is a literal)

"NanoPlot/barcode10/NanoPlot-report.html"

This is a local identifier minted within the nanopublication. https://w3id.org/np/RAK9xz_ccn.../job-69-sample_qa_plot

job-69-sample_qa_plot

https://w3id.org/np/snakemake/ruleName

ruleName

(this is a literal)

"sample_qa_plot"

This is a local identifier minted within the nanopublication. https://w3id.org/np/RAK9xz_ccn.../job-7-alignment_qa_report

job-7-alignment_qa_report

http://www.w3.org/1999/02/22-rdf-syntax-ns#type

type

https://w3id.org/np/snakemake/WorkflowJob

WorkflowJob

This is a local identifier minted within the nanopublication. https://w3id.org/np/RAK9xz_ccn.../job-7-alignment_qa_report

job-7-alignment_qa_report

https://w3id.org/np/snakemake/hasOutput

hasOutput

(this is a literal)

"qualimap/barcode10/qualimapReport.html"

This is a local identifier minted within the nanopublication. https://w3id.org/np/RAK9xz_ccn.../job-7-alignment_qa_report

job-7-alignment_qa_report

https://w3id.org/np/snakemake/ruleName

ruleName

(this is a literal)

"alignment_qa_report"

This is a local identifier minted within the nanopublication. https://w3id.org/np/RAK9xz_ccn.../job-70-sample_qa_plot

job-70-sample_qa_plot

http://www.w3.org/1999/02/22-rdf-syntax-ns#type

type

https://w3id.org/np/snakemake/WorkflowJob

WorkflowJob

This is a local identifier minted within the nanopublication. https://w3id.org/np/RAK9xz_ccn.../job-70-sample_qa_plot

job-70-sample_qa_plot

https://w3id.org/np/snakemake/hasOutput

hasOutput

(this is a literal)

"NanoPlot/barcode11/NanoPlot-report.html"

This is a local identifier minted within the nanopublication. https://w3id.org/np/RAK9xz_ccn.../job-70-sample_qa_plot

job-70-sample_qa_plot

https://w3id.org/np/snakemake/ruleName

ruleName

(this is a literal)

"sample_qa_plot"

This is a local identifier minted within the nanopublication. https://w3id.org/np/RAK9xz_ccn.../job-71-sample_qa_plot

job-71-sample_qa_plot

http://www.w3.org/1999/02/22-rdf-syntax-ns#type

type

https://w3id.org/np/snakemake/WorkflowJob

WorkflowJob

This is a local identifier minted within the nanopublication. https://w3id.org/np/RAK9xz_ccn.../job-71-sample_qa_plot

job-71-sample_qa_plot

https://w3id.org/np/snakemake/hasOutput

hasOutput

(this is a literal)

"NanoPlot/barcode12/NanoPlot-report.html"

This is a local identifier minted within the nanopublication. https://w3id.org/np/RAK9xz_ccn.../job-71-sample_qa_plot

job-71-sample_qa_plot

https://w3id.org/np/snakemake/ruleName

ruleName

(this is a literal)

"sample_qa_plot"

This is a local identifier minted within the nanopublication. https://w3id.org/np/RAK9xz_ccn.../job-72-sample_qa_plot

job-72-sample_qa_plot

http://www.w3.org/1999/02/22-rdf-syntax-ns#type

type

https://w3id.org/np/snakemake/WorkflowJob

WorkflowJob

This is a local identifier minted within the nanopublication. https://w3id.org/np/RAK9xz_ccn.../job-72-sample_qa_plot

job-72-sample_qa_plot

https://w3id.org/np/snakemake/hasOutput

hasOutput

(this is a literal)

"NanoPlot/barcode13/NanoPlot-report.html"

This is a local identifier minted within the nanopublication. https://w3id.org/np/RAK9xz_ccn.../job-72-sample_qa_plot

job-72-sample_qa_plot

https://w3id.org/np/snakemake/ruleName

ruleName

(this is a literal)

"sample_qa_plot"

This is a local identifier minted within the nanopublication. https://w3id.org/np/RAK9xz_ccn.../job-73-sample_qa_plot

job-73-sample_qa_plot

http://www.w3.org/1999/02/22-rdf-syntax-ns#type

type

https://w3id.org/np/snakemake/WorkflowJob

WorkflowJob

This is a local identifier minted within the nanopublication. https://w3id.org/np/RAK9xz_ccn.../job-73-sample_qa_plot

job-73-sample_qa_plot

https://w3id.org/np/snakemake/hasOutput

hasOutput

(this is a literal)

"NanoPlot/barcode15/NanoPlot-report.html"

This is a local identifier minted within the nanopublication. https://w3id.org/np/RAK9xz_ccn.../job-73-sample_qa_plot

job-73-sample_qa_plot

https://w3id.org/np/snakemake/ruleName

ruleName

(this is a literal)

"sample_qa_plot"

This is a local identifier minted within the nanopublication. https://w3id.org/np/RAK9xz_ccn.../job-74-sample_qa_plot

job-74-sample_qa_plot

http://www.w3.org/1999/02/22-rdf-syntax-ns#type

type

https://w3id.org/np/snakemake/WorkflowJob

WorkflowJob

This is a local identifier minted within the nanopublication. https://w3id.org/np/RAK9xz_ccn.../job-74-sample_qa_plot

job-74-sample_qa_plot

https://w3id.org/np/snakemake/hasOutput

hasOutput

(this is a literal)

"NanoPlot/barcode16/NanoPlot-report.html"

This is a local identifier minted within the nanopublication. https://w3id.org/np/RAK9xz_ccn.../job-74-sample_qa_plot

job-74-sample_qa_plot

https://w3id.org/np/snakemake/ruleName

ruleName

(this is a literal)

"sample_qa_plot"

This is a local identifier minted within the nanopublication. https://w3id.org/np/RAK9xz_ccn.../job-75-standardize_gff

job-75-standardize_gff

http://www.w3.org/1999/02/22-rdf-syntax-ns#type

type

https://w3id.org/np/snakemake/WorkflowJob

WorkflowJob

This is a local identifier minted within the nanopublication. https://w3id.org/np/RAK9xz_ccn.../job-75-standardize_gff

job-75-standardize_gff

https://w3id.org/np/snakemake/hasOutput

hasOutput

(this is a literal)

"references/standardized_genomic.gff"

This is a local identifier minted within the nanopublication. https://w3id.org/np/RAK9xz_ccn.../job-75-standardize_gff

job-75-standardize_gff

https://w3id.org/np/snakemake/ruleName

ruleName

(this is a literal)

"standardize_gff"

This is a local identifier minted within the nanopublication. https://w3id.org/np/RAK9xz_ccn.../job-76-total_sample_qa_plot

job-76-total_sample_qa_plot

http://www.w3.org/1999/02/22-rdf-syntax-ns#type

type

https://w3id.org/np/snakemake/WorkflowJob

WorkflowJob

This is a local identifier minted within the nanopublication. https://w3id.org/np/RAK9xz_ccn.../job-76-total_sample_qa_plot

job-76-total_sample_qa_plot

https://w3id.org/np/snakemake/hasOutput

hasOutput

(this is a literal)

"NanoPlot/NanoPlot-report.html"

This is a local identifier minted within the nanopublication. https://w3id.org/np/RAK9xz_ccn.../job-76-total_sample_qa_plot

job-76-total_sample_qa_plot

https://w3id.org/np/snakemake/ruleName

ruleName

(this is a literal)

"total_sample_qa_plot"

This is a local identifier minted within the nanopublication. https://w3id.org/np/RAK9xz_ccn.../job-77-transcriptid_to_gene

job-77-transcriptid_to_gene

http://www.w3.org/1999/02/22-rdf-syntax-ns#type

type

https://w3id.org/np/snakemake/WorkflowJob

WorkflowJob

This is a local identifier minted within the nanopublication. https://w3id.org/np/RAK9xz_ccn.../job-77-transcriptid_to_gene

job-77-transcriptid_to_gene

https://w3id.org/np/snakemake/hasOutput

hasOutput

(this is a literal)

"merged/all_counts_gene.tsv"

This is a local identifier minted within the nanopublication. https://w3id.org/np/RAK9xz_ccn.../job-77-transcriptid_to_gene

job-77-transcriptid_to_gene

https://w3id.org/np/snakemake/hasOutput

hasOutput

(this is a literal)

"merged/transcriptid_to_gene_plot.svg"

This is a local identifier minted within the nanopublication. https://w3id.org/np/RAK9xz_ccn.../job-77-transcriptid_to_gene

job-77-transcriptid_to_gene

https://w3id.org/np/snakemake/ruleName

ruleName

(this is a literal)

"transcriptid_to_gene"

This is a local identifier minted within the nanopublication. https://w3id.org/np/RAK9xz_ccn.../job-8-alignment_qa_report

job-8-alignment_qa_report

http://www.w3.org/1999/02/22-rdf-syntax-ns#type

type

https://w3id.org/np/snakemake/WorkflowJob

WorkflowJob

This is a local identifier minted within the nanopublication. https://w3id.org/np/RAK9xz_ccn.../job-8-alignment_qa_report

job-8-alignment_qa_report

https://w3id.org/np/snakemake/hasOutput

hasOutput

(this is a literal)

"qualimap/barcode11/qualimapReport.html"

This is a local identifier minted within the nanopublication. https://w3id.org/np/RAK9xz_ccn.../job-8-alignment_qa_report

job-8-alignment_qa_report

https://w3id.org/np/snakemake/ruleName

ruleName

(this is a literal)

"alignment_qa_report"

This is a local identifier minted within the nanopublication. https://w3id.org/np/RAK9xz_ccn.../job-9-alignment_qa_report

job-9-alignment_qa_report

http://www.w3.org/1999/02/22-rdf-syntax-ns#type

type

https://w3id.org/np/snakemake/WorkflowJob

WorkflowJob

This is a local identifier minted within the nanopublication. https://w3id.org/np/RAK9xz_ccn.../job-9-alignment_qa_report

job-9-alignment_qa_report

https://w3id.org/np/snakemake/hasOutput

hasOutput

(this is a literal)

"qualimap/barcode12/qualimapReport.html"

This is a local identifier minted within the nanopublication. https://w3id.org/np/RAK9xz_ccn.../job-9-alignment_qa_report

job-9-alignment_qa_report

https://w3id.org/np/snakemake/ruleName

ruleName

(this is a literal)

"alignment_qa_report"

This is a local identifier minted within the nanopublication. https://w3id.org/np/RAK9xz_ccn.../workflow-configuration

workflow-configuration

http://www.w3.org/2000/01/rdf-schema#label

label

(this is a literal)

"from workflow configuration"

This is a local identifier minted within the nanopublication. https://w3id.org/np/RAK9xz_ccn.../workflow-configuration

workflow-configuration

https://w3id.org/np/snakemake/hasConfigurationFile

hasConfigurationFile

This is a local identifier minted within the nanopublication. https://w3id.org/np/RAK9xz_ccn.../config-1

config-1

This is the identifier for the assertion of this nanopublication. https://w3id.org/np/RAK9xz_ccn.../assertion The assertion above http://www.w3.org/ns/prov#generatedAtTime

generatedAtTime

(this is a literal)

"2026-04-17T17:19:48.418353"

(xsd:dateTime) .

This is the identifier for the assertion of this nanopublication. https://w3id.org/np/RAK9xz_ccn.../assertion The assertion above http://www.w3.org/ns/prov#wasAttributedTo

wasAttributedTo

https://orcid.org/0000-0003-2408-7588

Christian Meesters

This is the identifier for this whole nanopublication. https://w3id.org/np/RAK9xz_ccn... This nanopublication http://www.w3.org/2000/01/rdf-schema#label has the label (this is a literal)

"Snakemake workflow metadata: RAjHDlPDghZzc9ZvQ3uJQNJ9Jd_KAYzZt7dk5PXKgjRyE"

This is the identifier for this whole nanopublication. https://w3id.org/np/RAK9xz_ccn... This nanopublication http://purl.org/nanopub/x/hasNanopubType has the type https://schema.org/Dataset

Dataset

This is the identifier for this whole nanopublication. https://w3id.org/np/RAK9xz_ccn... This nanopublication date and time when the nanopublication was created http://purl.org/dc/terms/created was created on (this is a literal)

"2026-04-17T15:19:46.851430+00:00"

(xsd:dateTime) .

This is a local identifier minted within the nanopublication. https://w3id.org/np/RAK9xz_ccn.../sig

sig

http://purl.org/nanopub/x/hasSignatureTarget has as target This is the identifier for this whole nanopublication. https://w3id.org/np/RAK9xz_ccn... this nanopublication .

This is a local identifier minted within the nanopublication. https://w3id.org/np/RAK9xz_ccn.../sig

sig

http://purl.org/nanopub/x/hasAlgorithm has the algorithm (this is a literal)

"RSA"

This is a local identifier minted within the nanopublication. https://w3id.org/np/RAK9xz_ccn.../sig

sig

http://purl.org/nanopub/x/hasPublicKey has the public key (this is a literal)

"MIIBIjANBgkqhkiG9w0BAQEFAAOCAQ8AMIIBCgKCAQEAkOFUnnRCp/k9/0ugvx8zQJ+Qc675W1Ug6F839+xvJ2QsSBu4iOJ1O2kJCmb3tALp3gJOt8sffRot3VrfY1hbgXxL7BVtDsfHHmXVff4YCeg5Ycdn5cDpLawDpAdYwMhK0LwIkZ3fwH9/o9JniYKXLV/jpF9bMKyiw/6tqlCHaMW1r8gzZzoxVIAakwvlABoY0iNoToLTlBRXEI4mLUNjDMnMwQgfh1KXMxMruNjW3wJyeDEIfa2ooAt0E4CRM9pkrEb37NzD9Jz8aSUFFY6BvIxF4ixK7rm6IUDvQ76LqXkEmgSeRv1kw7gnCe9wV/wHd0ZeW4heoBXmLHX3MvHfjwIDAQAB"

This is a local identifier minted within the nanopublication. https://w3id.org/np/RAK9xz_ccn.../sig

sig

http://purl.org/nanopub/x/hasSignature has the signature (this is a literal)

"EY7zqSpVioJESS2rVe69TiAJj50TpZXJWXG5lTJvxYfi2zJb7c7N9rwA52maMFZsqvY2/AfqBO6fRcjQ5hDCiFisBtqcXw9rCU/8Oia9HQo/+wWLYKP4IbYX144l+IRLIhiNAOsYa/S+aG+gbCRaSwW0Yeem99qx2L80lDsKvcEs/Vb7LxgBNj08lYGYzZ4PucmUGY6l9/LX3bBPGH8MCaPxCjO2s+QS3G4PLVo+2KUR+zrV+BDlKPc+tnaB44fPwCIQO9L9QXJiAFCyCS9lhXCocCXW2g/2LIlut8QSR4RyVZSJKcRPEv/hGFf9SkQ+ca9v6cK2NUw4TAI1jHTBeQ=="

This is a local identifier minted within the nanopublication. https://w3id.org/np/RAK9xz_ccn.../sig

sig

http://purl.org/nanopub/x/signedBy is signed by https://orcid.org/0000-0003-2408-7588

Christian Meesters

This is the identifier for this whole nanopublication. https://w3id.org/np/RAK9xz_ccn...

this nanopublication

http://purl.org/dc/terms/creator

creator

https://orcid.org/0000-0003-2408-7588

Christian Meesters

This is the identifier for this whole nanopublication. https://w3id.org/np/RAK9xz_ccn...

this nanopublication

http://purl.org/nanopub/x/signedBy

signedBy

https://orcid.org/0000-0003-2408-7588

Christian Meesters

This is the identifier for this whole nanopublication. https://w3id.org/np/RAK9xz_ccn...

this nanopublication

http://www.w3.org/ns/prov#generatedAtTime

generatedAtTime

(this is a literal)

"2026-04-17T17:19:48.418353"

(xsd:dateTime) .

This is the identifier for this whole nanopublication. https://w3id.org/np/RAK9xz_ccn...

this nanopublication

http://www.w3.org/ns/prov#wasAttributedTo

wasAttributedTo

https://orcid.org/0000-0003-2408-7588

Christian Meesters

Christian Meesters, 17 Apr 2026, 15:19:46 UTC

Raw formats

Full nanopublication: TriG(txt), JSON-LD(txt), N-Quads(txt), XML(txt)

Assertions only: Turtle(txt), JSON-LD(txt), N-Triples(txt), RDF/XML(txt)