References for: hasCommentText

Full identifier: https://w3id.org/linkflows/reviews/hasCommentText

Nanopublication Part Subject Predicate Object Published By Published On
links a nanopublication to its assertion http://www.nanopub.org/nschema#hasAssertion assertion
hasCommentText
has the comment text
Tobias Kuhn
2023-08-16T11:04:32.221Z
links a nanopublication to its assertion http://www.nanopub.org/nschema#hasAssertion assertion
hasCommentText
Tobias Kuhn
2023-08-16T11:04:32.221Z
links a nanopublication to its assertion http://www.nanopub.org/nschema#hasAssertion assertion
hasCommentText
This is just a test with a long long long long long long long long long long long long long long long long long long long long long long long long long long long long long long long long long long long long long long long long long long long long long long long long long long long long long long long long long long long long long long long long long long long long long long long long long long long long long long long long long long long long long long long long long long long long long long long long long long long long long long long long long long long long long comment.
Tobias Kuhn
2023-08-16T10:46:24.119Z
links a nanopublication to its assertion http://www.nanopub.org/nschema#hasAssertion assertion
hasCommentText
has the comment text
Tobias Kuhn
2023-08-16T10:41:01.767Z
links a nanopublication to its assertion http://www.nanopub.org/nschema#hasAssertion assertion
hasCommentText
Tobias Kuhn
2023-08-16T10:41:01.767Z
links a nanopublication to its assertion http://www.nanopub.org/nschema#hasAssertion assertion
hasCommentText
Nice article on a really nice, relevant topic. Here and there the structure/argument could be strengthened a bit, I made some suggestions for that (please ignore if not useful). Not sure how/if you can use it, but at Radboud uni (my previous jobs), we actually started DMPs that reflect this process, not so much with regard to FAIR but regarding what the researcher is expected to do according to the RDM policy of his/her faculty. The DMP included pre-given answers but with blank spots for details and indeed room to deviate if explained. If you are curious, I can bring you into contact with my Radboud uni successor to explore.
Barbara Magagna
2023-01-10T15:58:10.623Z
links a nanopublication to its assertion http://www.nanopub.org/nschema#hasAssertion assertion
hasCommentText
I think the article is relevant for the (intended) audience of FAIR Connect. It is well-written and mostly clear, although some concepts may be expanded, as they are not straightforward for data stewards at the beginning of their career. As also suggested by the other reviewer, it could be useful to add a section reporting more practical examples. I also added some comments in the text and edited the text where I felt necessary, but please feel free to ignore changes if I misunderstood.
Barbara Magagna
2023-01-10T15:53:48.826Z
links a nanopublication to its assertion http://www.nanopub.org/nschema#hasAssertion assertion
hasCommentText
Yes, and as expressed in http://purl.org/np/RAANP7AWgyZRaS2WgNcGDfp8-4bXv0blhKapMcUrrWvos , it would be nice to have a way to quantify the solidity.
Cristina-Iulia Bucur
2021-12-17T10:42:04.007Z
links a nanopublication to its assertion http://www.nanopub.org/nschema#hasAssertion assertion
hasCommentText
Yes, and we have also added the full stop at the end.
Cristina-Iulia Bucur
2021-12-17T10:38:52.546Z
links a nanopublication to its assertion http://www.nanopub.org/nschema#hasAssertion assertion
hasCommentText
Yes, and it would be nice to have a way to assess how well the formalization corresponds to the original claim.
Cristina-Iulia Bucur
2021-12-17T10:33:10.257Z
links a nanopublication to its assertion http://www.nanopub.org/nschema#hasAssertion assertion
hasCommentText
Yes, and maybe we should clarify the procedure for doing this systematically.
Cristina-Iulia Bucur
2021-12-17T10:29:59.594Z
links a nanopublication to its assertion http://www.nanopub.org/nschema#hasAssertion assertion
hasCommentText
We have adapted the formalization accordingly.
Cristina-Iulia Bucur
2021-12-17T10:25:51.830Z
links a nanopublication to its assertion http://www.nanopub.org/nschema#hasAssertion assertion
hasCommentText
Yes, it would be useful to specify how the sources should be referred to.
Cristina-Iulia Bucur
2021-12-17T10:24:40.300Z
links a nanopublication to its assertion http://www.nanopub.org/nschema#hasAssertion assertion
hasCommentText
We thank the reviewer for this comment and have changed the formalization accordingly.
Cristina-Iulia Bucur
2021-12-17T10:22:42.515Z
links a nanopublication to its assertion http://www.nanopub.org/nschema#hasAssertion assertion
hasCommentText
I agree and I changed the provenance using the 'Generated by a formalization activity' template accordingly.
Núria Queralt Rosinach
2021-12-08T21:46:32.005Z
links a nanopublication to its assertion http://www.nanopub.org/nschema#hasAssertion assertion
hasCommentText
I agree and I changed the provenance using the 'Generated by a formalization activity' template following reviewer's suggestion.
Núria Queralt Rosinach
2021-12-08T21:44:54.439Z
links a nanopublication to its assertion http://www.nanopub.org/nschema#hasAssertion assertion
hasCommentText
I changed the context with the more specific class 'genetic disorder' that is stated in the assertion but was not included in the first version, which is 'autosomal recessive disorder' thus declaring the congenital characteristic of this disorder.
Núria Queralt Rosinach
2021-12-08T21:39:35.794Z
links a nanopublication to its assertion http://www.nanopub.org/nschema#hasAssertion assertion
hasCommentText
I agree that the object 'ERAD pathway' is not the appropiate. I addressed this minting a new class 'dysfunction of ERAD pathway' which is more accurate.
Núria Queralt Rosinach
2021-12-08T21:32:36.553Z
links a nanopublication to its assertion http://www.nanopub.org/nschema#hasAssertion assertion
hasCommentText
I adressed the good point made by the reviewer following his suggestion: mint a new class 'dysfunction of ERAD pathway' and then use this class in object position.
Núria Queralt Rosinach
2021-12-08T21:29:55.346Z
links a nanopublication to its assertion http://www.nanopub.org/nschema#hasAssertion assertion
hasCommentText
"autosomal recessive disorder" has been added as "genetic disorder" to declare the context of the assertion
Núria Queralt Rosinach
2021-12-08T21:27:05.311Z
links a nanopublication to its assertion http://www.nanopub.org/nschema#hasAssertion assertion
hasCommentText
Thank you for your suggestion, which was addressed.
Cristina-Iulia Bucur
2021-11-17T19:50:51.725Z
links a nanopublication to its assertion http://www.nanopub.org/nschema#hasAssertion assertion
hasCommentText
Thank you.
Cristina-Iulia Bucur
2021-11-17T19:45:57.799Z
links a nanopublication to its assertion http://www.nanopub.org/nschema#hasAssertion assertion
hasCommentText
Thank you.
Cristina-Iulia Bucur
2021-11-17T19:45:21.231Z
links a nanopublication to its assertion http://www.nanopub.org/nschema#hasAssertion assertion
hasCommentText
Thank you.
Cristina-Iulia Bucur
2021-11-17T19:44:46.412Z
links a nanopublication to its assertion http://www.nanopub.org/nschema#hasAssertion assertion
hasCommentText
Thank you.
Cristina-Iulia Bucur
2021-11-17T19:44:43.500Z
links a nanopublication to its assertion http://www.nanopub.org/nschema#hasAssertion assertion
hasCommentText
In another review comment (http://purl.org/np/RALWxVELKuqrkcO9ud2eXr0E2-ot5bl-0NpOIQi1ktrgI) it is specified that this naming is ok.
Cristina-Iulia Bucur
2021-11-17T19:44:11.450Z
links a nanopublication to its assertion http://www.nanopub.org/nschema#hasAssertion assertion
hasCommentText
In another review comment (http://purl.org/np/RALWxVELKuqrkcO9ud2eXr0E2-ot5bl-0NpOIQi1ktrgI) it is specified that this naming is ok.
Cristina-Iulia Bucur
2021-11-17T19:43:28.590Z
links a nanopublication to its assertion http://www.nanopub.org/nschema#hasAssertion assertion
hasCommentText
In another review comment (http://purl.org/np/RALWxVELKuqrkcO9ud2eXr0E2-ot5bl-0NpOIQi1ktrgI) it is specified that this naming is ok.
Cristina-Iulia Bucur
2021-11-17T19:41:33.173Z
links a nanopublication to its assertion http://www.nanopub.org/nschema#hasAssertion assertion
hasCommentText
Thank you for your suggestion, which was addressed.
Cristina-Iulia Bucur
2021-11-17T19:37:00.187Z
links a nanopublication to its assertion http://www.nanopub.org/nschema#hasAssertion assertion
hasCommentText
Thank you for your suggestion, which was addressed.
Cristina-Iulia Bucur
2021-11-17T19:35:59.839Z
links a nanopublication to its assertion http://www.nanopub.org/nschema#hasAssertion assertion
hasCommentText
Thank you for your suggestion, which was addressed.
Cristina-Iulia Bucur
2021-11-17T19:29:32.702Z
links a nanopublication to its assertion http://www.nanopub.org/nschema#hasAssertion assertion
hasCommentText
I agree
Russell Bainer
2021-11-12T17:38:49.932Z
links a nanopublication to its assertion http://www.nanopub.org/nschema#hasAssertion assertion
hasCommentText
Provenance updated
Russell Bainer
2021-11-12T17:38:29.656Z
links a nanopublication to its assertion http://www.nanopub.org/nschema#hasAssertion assertion
hasCommentText
Class updated
Russell Bainer
2021-11-12T17:38:07.619Z
links a nanopublication to its assertion http://www.nanopub.org/nschema#hasAssertion assertion
hasCommentText
Yes! I am quite clever.
Russell Bainer
2021-11-12T17:37:47.887Z
links a nanopublication to its assertion http://www.nanopub.org/nschema#hasAssertion assertion
hasCommentText
There is now!
Russell Bainer
2021-11-12T17:37:24.209Z
links a nanopublication to its assertion http://www.nanopub.org/nschema#hasAssertion assertion
hasCommentText
Ignored according to Cristina's recommendation
Russell Bainer
2021-11-12T17:37:06.429Z
links a nanopublication to its assertion http://www.nanopub.org/nschema#hasAssertion assertion
hasCommentText
Publication link included
Russell Bainer
2021-11-12T17:36:34.414Z
links a nanopublication to its assertion http://www.nanopub.org/nschema#hasAssertion assertion
hasCommentText
class updated
Russell Bainer
2021-11-12T17:36:11.306Z
links a nanopublication to its assertion http://www.nanopub.org/nschema#hasAssertion assertion
hasCommentText
updated to reflect ecm binding as a property of the cancer cell
Russell Bainer
2021-11-12T17:22:44.878Z
links a nanopublication to its assertion http://www.nanopub.org/nschema#hasAssertion assertion
hasCommentText
Looking at this again, I think this formalization can be made more precise (and in a way simpler) by not using the universal context, but instead biodiversity data (Q28946370) as context and data reuse (Q58023280) as object.
Tobias Kuhn
2021-11-09T14:37:39.607Z
links a nanopublication to its assertion http://www.nanopub.org/nschema#hasAssertion assertion
hasCommentText
my pleasure!
Michel Dumontier
2021-11-08T08:13:48.359Z
links a nanopublication to its assertion http://www.nanopub.org/nschema#hasAssertion assertion
hasCommentText
agreed. nothing to change
Michel Dumontier
2021-11-08T08:13:33.496Z
links a nanopublication to its assertion http://www.nanopub.org/nschema#hasAssertion assertion
hasCommentText
made changes
Michel Dumontier
2021-11-08T08:13:13.159Z
links a nanopublication to its assertion http://www.nanopub.org/nschema#hasAssertion assertion
hasCommentText
no change required
Michel Dumontier
2021-11-08T08:12:56.653Z
links a nanopublication to its assertion http://www.nanopub.org/nschema#hasAssertion assertion
hasCommentText
added publication
Michel Dumontier
2021-11-08T08:12:41.074Z
links a nanopublication to its assertion http://www.nanopub.org/nschema#hasAssertion assertion
hasCommentText
I agree
Michel Dumontier
2021-11-08T08:12:23.405Z
links a nanopublication to its assertion http://www.nanopub.org/nschema#hasAssertion assertion
hasCommentText
We discussed that and agreed to "universal context" together with a change of subject and object classes.
Friederike Ehrhart
2021-11-05T09:26:16.589Z
links a nanopublication to its assertion http://www.nanopub.org/nschema#hasAssertion assertion
hasCommentText
Changed according to suggestion.
Friederike Ehrhart
2021-11-05T09:25:19.129Z
links a nanopublication to its assertion http://www.nanopub.org/nschema#hasAssertion assertion
hasCommentText
No excess or deficiency involved here, that is just a statement that Vitamin A targets and CAKUT related proteins overlap (are sometimes the same).
Friederike Ehrhart
2021-11-05T09:24:41.464Z
links a nanopublication to its assertion http://www.nanopub.org/nschema#hasAssertion assertion
hasCommentText
Changed according to suggestion.
Friederike Ehrhart
2021-11-05T09:24:11.073Z
links a nanopublication to its assertion http://www.nanopub.org/nschema#hasAssertion assertion
hasCommentText
Changed according to suggestion.
Friederike Ehrhart
2021-11-05T09:23:43.326Z
links a nanopublication to its assertion http://www.nanopub.org/nschema#hasAssertion assertion
hasCommentText
The publication is about overlapping genes in the disease networks of CAKUT and in the vitamin A targets. There is no causality involved.
Friederike Ehrhart
2021-11-05T09:23:13.945Z
links a nanopublication to its assertion http://www.nanopub.org/nschema#hasAssertion assertion
hasCommentText
Replaced by new class.
Friederike Ehrhart
2021-11-05T09:22:32.384Z
links a nanopublication to its assertion http://www.nanopub.org/nschema#hasAssertion assertion
hasCommentText
Chris Evelo added as author as agreed.
Friederike Ehrhart
2021-11-05T09:21:52.469Z
links a nanopublication to its assertion http://www.nanopub.org/nschema#hasAssertion assertion
hasCommentText
Changed according to suggestion.
Friederike Ehrhart
2021-11-05T09:20:30.590Z
links a nanopublication to its assertion http://www.nanopub.org/nschema#hasAssertion assertion
hasCommentText
We discussed that and agree to change the context (and the classes) so that "universal context" fits best.
Friederike Ehrhart
2021-11-05T09:19:14.916Z
links a nanopublication to its assertion http://www.nanopub.org/nschema#hasAssertion assertion
hasCommentText
Thank you.
Cristina-Iulia Bucur
2021-11-04T08:29:43.987Z
links a nanopublication to its assertion http://www.nanopub.org/nschema#hasAssertion assertion
hasCommentText
Thank you for your suggestion which has been implemented.
Cristina-Iulia Bucur
2021-11-04T08:29:13.197Z
links a nanopublication to its assertion http://www.nanopub.org/nschema#hasAssertion assertion
hasCommentText
Thank you for the suggestion which was implemented.
Cristina-Iulia Bucur
2021-11-04T08:27:07.342Z
links a nanopublication to its assertion http://www.nanopub.org/nschema#hasAssertion assertion
hasCommentText
Thank you for the suggestion which was implemented.
Cristina-Iulia Bucur
2021-11-04T08:26:28.261Z
links a nanopublication to its assertion http://www.nanopub.org/nschema#hasAssertion assertion
hasCommentText
Thank you for your suggestion which has been implemented.
Cristina-Iulia Bucur
2021-11-04T08:25:41.076Z
links a nanopublication to its assertion http://www.nanopub.org/nschema#hasAssertion assertion
hasCommentText
Thank you for the comment.
Cristina-Iulia Bucur
2021-11-04T08:22:00.283Z
links a nanopublication to its assertion http://www.nanopub.org/nschema#hasAssertion assertion
hasCommentText
Thank you for the suggestion.
Cristina-Iulia Bucur
2021-11-04T08:21:12.374Z
links a nanopublication to its assertion http://www.nanopub.org/nschema#hasAssertion assertion
hasCommentText
This has been corrected.
Cristina-Iulia Bucur
2021-11-04T08:20:34.923Z
links a nanopublication to its assertion http://www.nanopub.org/nschema#hasAssertion assertion
hasCommentText
Thank you for your valuable suggestion.
Cristina-Iulia Bucur
2021-11-04T08:19:30.326Z
links a nanopublication to its assertion http://www.nanopub.org/nschema#hasAssertion assertion
hasCommentText
Addressed in previous correction
Russell Bainer
2021-10-29T16:37:35.238Z
links a nanopublication to its assertion http://www.nanopub.org/nschema#hasAssertion assertion
hasCommentText
addressed in previous comment
Russell Bainer
2021-10-29T16:36:33.601Z
links a nanopublication to its assertion http://www.nanopub.org/nschema#hasAssertion assertion
hasCommentText
I have updated the class to refer to more appropriate wikidata class
Russell Bainer
2021-10-29T16:36:01.048Z
links a nanopublication to its assertion http://www.nanopub.org/nschema#hasAssertion assertion
hasCommentText
This issue has been resolved as indicated.
Russell Bainer
2021-10-29T16:28:52.292Z
links a nanopublication to its assertion http://www.nanopub.org/nschema#hasAssertion assertion
hasCommentText
I would add a skos:related class with "metabolic abnormality" if such class exists.
Cristina-Iulia Bucur
2021-10-29T11:53:30.099Z
links a nanopublication to its assertion http://www.nanopub.org/nschema#hasAssertion assertion
hasCommentText
The general class definition is good.
Cristina-Iulia Bucur
2021-10-29T11:51:16.308Z
links a nanopublication to its assertion http://www.nanopub.org/nschema#hasAssertion assertion
hasCommentText
The qualifier should be "frequently" instead of "generally".
Cristina-Iulia Bucur
2021-10-29T11:49:51.222Z
links a nanopublication to its assertion http://www.nanopub.org/nschema#hasAssertion assertion
hasCommentText
The general structure of the formalization is good.
Cristina-Iulia Bucur
2021-10-29T11:48:49.378Z
links a nanopublication to its assertion http://www.nanopub.org/nschema#hasAssertion assertion
hasCommentText
The provenance of this nanopublication should be a FormalizationActivity and all the fields should be filled in in an appropriate manner: the link to the article, formalization author orcid, the exact quote from the article that contains the scientific claim.
Cristina-Iulia Bucur
2021-10-29T11:47:59.735Z
links a nanopublication to its assertion http://www.nanopub.org/nschema#hasAssertion assertion
hasCommentText
no modification requested
Valentin GROUÈS
2021-10-29T08:40:10.473Z
links a nanopublication to its assertion http://www.nanopub.org/nschema#hasAssertion assertion
hasCommentText
no modification requested
Valentin GROUÈS
2021-10-29T08:39:51.998Z
links a nanopublication to its assertion http://www.nanopub.org/nschema#hasAssertion assertion
hasCommentText
I don't think the original publication shows a causal relationship. It seems to me only a correlation is proven.
Valentin GROUÈS
2021-10-29T08:39:29.183Z
links a nanopublication to its assertion http://www.nanopub.org/nschema#hasAssertion assertion
hasCommentText
should be fixed hopefully. not sure as it's not clear how the problem appeared in the first place.
Valentin GROUÈS
2021-10-29T08:38:12.684Z
links a nanopublication to its assertion http://www.nanopub.org/nschema#hasAssertion assertion
hasCommentText
should be fixed hopefully. not sure as it's not clear how the problem appeared in the first place.
Valentin GROUÈS
2021-10-29T08:37:55.322Z
links a nanopublication to its assertion http://www.nanopub.org/nschema#hasAssertion assertion
hasCommentText
done
Valentin GROUÈS
2021-10-29T08:37:11.867Z
links a nanopublication to its assertion http://www.nanopub.org/nschema#hasAssertion assertion
hasCommentText
no modification requested
Valentin GROUÈS
2021-10-29T08:36:54.409Z
links a nanopublication to its assertion http://www.nanopub.org/nschema#hasAssertion assertion
hasCommentText
done
Valentin GROUÈS
2021-10-29T08:36:14.854Z
links a nanopublication to its assertion http://www.nanopub.org/nschema#hasAssertion assertion
hasCommentText
nothing to change
Valentin GROUÈS
2021-10-29T08:19:07.595Z
links a nanopublication to its assertion http://www.nanopub.org/nschema#hasAssertion assertion
hasCommentText
I updated the class description to use skos:related to for glycocalyx
Russell Bainer
2021-10-28T22:17:27.355Z
links a nanopublication to its assertion http://www.nanopub.org/nschema#hasAssertion assertion
hasCommentText
Thank you!
Mariya Dimitrova
2021-10-28T07:37:18.962Z
links a nanopublication to its assertion http://www.nanopub.org/nschema#hasAssertion assertion
hasCommentText
Thank you!
Mariya Dimitrova
2021-10-28T07:36:57.632Z
links a nanopublication to its assertion http://www.nanopub.org/nschema#hasAssertion assertion
hasCommentText
Thank you!
Mariya Dimitrova
2021-10-28T07:36:36.180Z
links a nanopublication to its assertion http://www.nanopub.org/nschema#hasAssertion assertion
hasCommentText
Thank you for your review!
Mariya Dimitrova
2021-10-28T07:36:18.367Z
links a nanopublication to its assertion http://www.nanopub.org/nschema#hasAssertion assertion
hasCommentText
Thank you for your review! While we agree that when it comes to legal issues a more concrete language should be used, our formalisation is of a statement which expresses an opinion rather than a legal fact. Licenses with a non-commercial clause do not inhibit reuse of biodiversity data because of legal reasons but as a consequence of the difficulty to reuse data.
Mariya Dimitrova
2021-10-28T07:35:56.141Z
links a nanopublication to its assertion http://www.nanopub.org/nschema#hasAssertion assertion
hasCommentText
Thank you! In response to your other review comment we made small changes to the formalisation.
Mariya Dimitrova
2021-10-28T07:33:27.430Z
links a nanopublication to its assertion http://www.nanopub.org/nschema#hasAssertion assertion
hasCommentText
We agree with this review comment and have addressed it by defining a new class license-with-non-commercial-clause which is a subclass of software license (Q79719) and is related to Q65071627 and have used this new class as the subject of our updated formalisation.
Mariya Dimitrova
2021-10-28T07:32:15.311Z
links a nanopublication to its assertion http://www.nanopub.org/nschema#hasAssertion assertion
hasCommentText
Thank you!
Mariya Dimitrova
2021-10-28T07:10:36.803Z
links a nanopublication to its assertion http://www.nanopub.org/nschema#hasAssertion assertion
hasCommentText
I agree that it was not clear that this is an instance. To address this review comment, I have created a new class (latest-release-of-openbiodiv), which is a subclass of software release (Q20631656) and related to openbiodiv-knowledge-graph, and I have updated the formalisation nanopub to say that 'The latest release of the OpenBiodiv knowledge graph contains semantic triples extracted from biodiversity literature'. Thank you for your review!
Mariya Dimitrova
2021-10-28T07:10:07.990Z
links a nanopublication to its assertion http://www.nanopub.org/nschema#hasAssertion assertion
hasCommentText
Thank you.
Mariya Dimitrova
2021-10-28T06:36:54.931Z
links a nanopublication to its assertion http://www.nanopub.org/nschema#hasAssertion assertion
hasCommentText
Thank you!
Mariya Dimitrova
2021-10-28T06:36:29.003Z
links a nanopublication to its assertion http://www.nanopub.org/nschema#hasAssertion assertion
hasCommentText
Thanks for the positive review on the class definition.
Mariya Dimitrova
2021-10-28T06:09:12.750Z
links a nanopublication to its assertion http://www.nanopub.org/nschema#hasAssertion assertion
hasCommentText
Thanks for the positive review on the class definition.
Mariya Dimitrova
2021-10-28T06:08:32.658Z
links a nanopublication to its assertion http://www.nanopub.org/nschema#hasAssertion assertion
hasCommentText
Thanks for the positive review on the class definition.
Mariya Dimitrova
2021-10-28T06:07:55.755Z
links a nanopublication to its assertion http://www.nanopub.org/nschema#hasAssertion assertion
hasCommentText
Thanks for the positive review on the class definition.
Mariya Dimitrova
2021-10-28T06:06:52.526Z
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