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rule-plot_positions

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🚩 Minted in Nanopublication

 Snakemake workflow metadata: https://w3id.org/np/RAOBjU_aTRgW5zb2MFGvZPAXBZegQRzVoUU-aSGQFpxh4 Dataset comment... approve/disapprove... edit as derived nanopublication...

This is a local identifier minted within the nanopublication. https://w3id.org/np/RAxKHcmY3z.../dataset
dataset
https://w3id.org/np/snakemake/generatedAt
generatedAt
(this is a literal)
"2026-03-17T16:56:38.233861+00:00"
(xsd:dateTime) .
This is a local identifier minted within the nanopublication. https://w3id.org/np/RAxKHcmY3z.../dataset
dataset
https://w3id.org/np/snakemake/hasSummary
hasSummary
This is a local identifier minted within the nanopublication. https://w3id.org/np/RAxKHcmY3z.../workflowsummary
workflowsummary
.
This is a local identifier minted within the nanopublication. https://w3id.org/np/RAxKHcmY3z.../dataset
dataset
https://w3id.org/np/snakemake/hasWorkflowRun
hasWorkflowRun
This is a local identifier minted within the nanopublication. https://w3id.org/np/RAxKHcmY3z.../workflowrun
workflowrun
.
This is a local identifier minted within the nanopublication. https://w3id.org/np/RAxKHcmY3z.../param-bwa_mem-1
param-bwa_mem-1
https://w3id.org/np/snakemake/parameterIndex
parameterIndex
(this is a literal)
"1"
(xsd:integer) .
This is a local identifier minted within the nanopublication. https://w3id.org/np/RAxKHcmY3z.../param-bwa_mem-2
param-bwa_mem-2
https://w3id.org/np/snakemake/parameterIndex
parameterIndex
(this is a literal)
"2"
(xsd:integer) .
This is a local identifier minted within the nanopublication. https://w3id.org/np/RAxKHcmY3z.../param-bwa_mem-2
param-bwa_mem-2
https://w3id.org/np/snakemake/parameterValue
parameterValue
(this is a literal)
"samtools"
.
This is a local identifier minted within the nanopublication. https://w3id.org/np/RAxKHcmY3z.../param-bwa_mem-3
param-bwa_mem-3
https://w3id.org/np/snakemake/parameterIndex
parameterIndex
(this is a literal)
"3"
(xsd:integer) .
This is a local identifier minted within the nanopublication. https://w3id.org/np/RAxKHcmY3z.../param-bwa_mem-3
param-bwa_mem-3
https://w3id.org/np/snakemake/parameterValue
parameterValue
(this is a literal)
"coordinate"
.
This is a local identifier minted within the nanopublication. https://w3id.org/np/RAxKHcmY3z.../param-bwa_mem-4
param-bwa_mem-4
https://w3id.org/np/snakemake/parameterIndex
parameterIndex
(this is a literal)
"4"
(xsd:integer) .
This is a local identifier minted within the nanopublication. https://w3id.org/np/RAxKHcmY3z.../param-bwa_mem-4
param-bwa_mem-4
https://w3id.org/np/snakemake/parameterValue
parameterValue
(this is a literal)
""
.
This is a local identifier minted within the nanopublication. https://w3id.org/np/RAxKHcmY3z.../param-samtools_index-1
param-samtools_index-1
https://w3id.org/np/snakemake/parameterIndex
parameterIndex
(this is a literal)
"1"
(xsd:integer) .
This is a local identifier minted within the nanopublication. https://w3id.org/np/RAxKHcmY3z.../rule-all
rule-all
https://w3id.org/np/snakemake/hasSoftwarePackage
hasSoftwarePackage
(this is a literal)
"all"
.
This is a local identifier minted within the nanopublication. https://w3id.org/np/RAxKHcmY3z.../rule-all
rule-all
https://w3id.org/np/snakemake/ruleName
ruleName
(this is a literal)
"all"
.
This is a local identifier minted within the nanopublication. https://w3id.org/np/RAxKHcmY3z.../rule-bcftools_call
rule-bcftools_call
https://w3id.org/np/snakemake/hasOutput
hasOutput
(this is a literal)
"calls/all.vcf"
.
This is a local identifier minted within the nanopublication. https://w3id.org/np/RAxKHcmY3z.../rule-bcftools_call
rule-bcftools_call
https://w3id.org/np/snakemake/ruleName
ruleName
(this is a literal)
"bcftools_call"
.
This is a local identifier minted within the nanopublication. https://w3id.org/np/RAxKHcmY3z.../rule-bwa_mem
rule-bwa_mem
https://w3id.org/np/snakemake/hasOutput
hasOutput
(this is a literal)
"sorted_reads/A.bam"
.
This is a local identifier minted within the nanopublication. https://w3id.org/np/RAxKHcmY3z.../rule-bwa_mem
rule-bwa_mem
https://w3id.org/np/snakemake/hasOutput
hasOutput
(this is a literal)
"sorted_reads/B.bam"
.
This is a local identifier minted within the nanopublication. https://w3id.org/np/RAxKHcmY3z.../rule-bwa_mem
rule-bwa_mem
https://w3id.org/np/snakemake/hasOutput
hasOutput
(this is a literal)
"sorted_reads/{sample}.bam"
.
This is a local identifier minted within the nanopublication. https://w3id.org/np/RAxKHcmY3z.../rule-bwa_mem
rule-bwa_mem
https://w3id.org/np/snakemake/hasParameterization
hasParameterization
This is a local identifier minted within the nanopublication. https://w3id.org/np/RAxKHcmY3z.../param-bwa_mem-1
param-bwa_mem-1
.
This is a local identifier minted within the nanopublication. https://w3id.org/np/RAxKHcmY3z.../rule-bwa_mem
rule-bwa_mem
https://w3id.org/np/snakemake/hasParameterization
hasParameterization
This is a local identifier minted within the nanopublication. https://w3id.org/np/RAxKHcmY3z.../param-bwa_mem-2
param-bwa_mem-2
.
This is a local identifier minted within the nanopublication. https://w3id.org/np/RAxKHcmY3z.../rule-bwa_mem
rule-bwa_mem
https://w3id.org/np/snakemake/hasParameterization
hasParameterization
This is a local identifier minted within the nanopublication. https://w3id.org/np/RAxKHcmY3z.../param-bwa_mem-3
param-bwa_mem-3
.
This is a local identifier minted within the nanopublication. https://w3id.org/np/RAxKHcmY3z.../rule-bwa_mem
rule-bwa_mem
https://w3id.org/np/snakemake/hasParameterization
hasParameterization
This is a local identifier minted within the nanopublication. https://w3id.org/np/RAxKHcmY3z.../param-bwa_mem-4
param-bwa_mem-4
.
This is a local identifier minted within the nanopublication. https://w3id.org/np/RAxKHcmY3z.../rule-bwa_mem
rule-bwa_mem
https://w3id.org/np/snakemake/ruleName
ruleName
(this is a literal)
"bwa_mem"
.
This is a local identifier minted within the nanopublication. https://w3id.org/np/RAxKHcmY3z.../rule-plot_positions
rule-plot_positions
https://w3id.org/np/snakemake/ruleName
ruleName
(this is a literal)
"plot_positions"
.
This is a local identifier minted within the nanopublication. https://w3id.org/np/RAxKHcmY3z.../rule-plot_quals
rule-plot_quals
https://w3id.org/np/snakemake/hasOutput
hasOutput
(this is a literal)
"calls/quals.png"
.
This is a local identifier minted within the nanopublication. https://w3id.org/np/RAxKHcmY3z.../rule-plot_quals
rule-plot_quals
https://w3id.org/np/snakemake/ruleName
ruleName
(this is a literal)
"plot_quals"
.
This is a local identifier minted within the nanopublication. https://w3id.org/np/RAxKHcmY3z.../rule-samtools_index
rule-samtools_index
https://w3id.org/np/snakemake/ruleName
ruleName
(this is a literal)
"samtools_index"
.
This is a local identifier minted within the nanopublication. https://w3id.org/np/RAxKHcmY3z.../workflowrun
workflowrun
https://w3id.org/np/snakemake/configfile
configfile
(this is a literal)
"config/config.yaml"
.
This is a local identifier minted within the nanopublication. https://w3id.org/np/RAxKHcmY3z.../workflowrun
workflowrun
https://w3id.org/np/snakemake/dagSource
dagSource
(this is a literal)
"Snakefile"
.
This is a local identifier minted within the nanopublication. https://w3id.org/np/RAxKHcmY3z.../workflowrun
workflowrun
https://w3id.org/np/snakemake/dagSource
dagSource
(this is a literal)
"config/config.yaml"
.
This is a local identifier minted within the nanopublication. https://w3id.org/np/RAxKHcmY3z.../workflowrun
workflowrun
https://w3id.org/np/snakemake/dagSource
dagSource
(this is a literal)
"envs/bcftools.yml"
.
This is a local identifier minted within the nanopublication. https://w3id.org/np/RAxKHcmY3z.../workflowrun
workflowrun
https://w3id.org/np/snakemake/dagSource
dagSource
(this is a literal)
"envs/bwa.yml"
.
This is a local identifier minted within the nanopublication. https://w3id.org/np/RAxKHcmY3z.../workflowrun
workflowrun
https://w3id.org/np/snakemake/dagSource
dagSource
(this is a literal)
"envs/matplotlib.yml"
.
This is a local identifier minted within the nanopublication. https://w3id.org/np/RAxKHcmY3z.../workflowrun
workflowrun
https://w3id.org/np/snakemake/dagSource
dagSource
(this is a literal)
"envs/samtools.yml"
.
This is a local identifier minted within the nanopublication. https://w3id.org/np/RAxKHcmY3z.../workflowrun
workflowrun
https://w3id.org/np/snakemake/dagSource
dagSource
(this is a literal)
"scripts/plot-positions.py"
.
This is a local identifier minted within the nanopublication. https://w3id.org/np/RAxKHcmY3z.../workflowrun
workflowrun
https://w3id.org/np/snakemake/dagSource
dagSource
(this is a literal)
"scripts/plot-quals.py"
.
This is a local identifier minted within the nanopublication. https://w3id.org/np/RAxKHcmY3z.../workflowrun
workflowrun
https://w3id.org/np/snakemake/description
description
(this is a literal)
""
.
This is a local identifier minted within the nanopublication. https://w3id.org/np/RAxKHcmY3z.../workflowrun
workflowrun
https://w3id.org/np/snakemake/hasRule
hasRule
This is a local identifier minted within the nanopublication. https://w3id.org/np/RAxKHcmY3z.../rule-all
rule-all
.
This is a local identifier minted within the nanopublication. https://w3id.org/np/RAxKHcmY3z.../workflowrun
workflowrun
https://w3id.org/np/snakemake/hasRule
hasRule
This is a local identifier minted within the nanopublication. https://w3id.org/np/RAxKHcmY3z.../rule-bcftools_call
rule-bcftools_call
.
This is a local identifier minted within the nanopublication. https://w3id.org/np/RAxKHcmY3z.../workflowrun
workflowrun
https://w3id.org/np/snakemake/hasRule
hasRule
This is a local identifier minted within the nanopublication. https://w3id.org/np/RAxKHcmY3z.../rule-bwa_mem
rule-bwa_mem
.
This is a local identifier minted within the nanopublication. https://w3id.org/np/RAxKHcmY3z.../workflowrun
workflowrun
https://w3id.org/np/snakemake/hasRule
hasRule
This is a local identifier minted within the nanopublication. https://w3id.org/np/RAxKHcmY3z.../rule-plot_positions
rule-plot_positions
.
This is a local identifier minted within the nanopublication. https://w3id.org/np/RAxKHcmY3z.../workflowrun
workflowrun
https://w3id.org/np/snakemake/hasRule
hasRule
This is a local identifier minted within the nanopublication. https://w3id.org/np/RAxKHcmY3z.../rule-plot_quals
rule-plot_quals
.
This is a local identifier minted within the nanopublication. https://w3id.org/np/RAxKHcmY3z.../workflowrun
workflowrun
https://w3id.org/np/snakemake/hasRule
hasRule
This is a local identifier minted within the nanopublication. https://w3id.org/np/RAxKHcmY3z.../rule-samtools_index
rule-samtools_index
.
This is a local identifier minted within the nanopublication. https://w3id.org/np/RAxKHcmY3z.../workflowrun
workflowrun
https://w3id.org/np/snakemake/workflowMetadataJSON
workflowMetadataJSON
(this is a literal)
"{}"
.
This is a local identifier minted within the nanopublication. https://w3id.org/np/RAxKHcmY3z.../workflowsummary
workflowsummary
https://w3id.org/np/snakemake/numberOfJobs
numberOfJobs
(this is a literal)
"8"
(xsd:integer) .
This is a local identifier minted within the nanopublication. https://w3id.org/np/RAxKHcmY3z.../workflowsummary
workflowsummary
https://w3id.org/np/snakemake/numberOfResults
numberOfResults
(this is a literal)
"2"
(xsd:integer) .
This is a local identifier minted within the nanopublication. https://w3id.org/np/RAxKHcmY3z.../workflowsummary
workflowsummary
https://w3id.org/np/snakemake/numberOfRules
numberOfRules
(this is a literal)
"6"
(xsd:integer) .
This is the identifier for this whole nanopublication. https://w3id.org/np/RAxKHcmY3z... This nanopublication date and time when the nanopublication was created http://purl.org/dc/terms/created was created on (this is a literal)
"2026-03-17T16:56:38.233861+00:00"
(xsd:dateTime) .
This is a local identifier minted within the nanopublication. https://w3id.org/np/RAxKHcmY3z.../sig
sig
http://purl.org/nanopub/x/hasSignatureTarget has as target This is the identifier for this whole nanopublication. https://w3id.org/np/RAxKHcmY3z... this nanopublication .
This is a local identifier minted within the nanopublication. https://w3id.org/np/RAxKHcmY3z.../sig
sig
http://purl.org/nanopub/x/hasAlgorithm has the algorithm (this is a literal)
"RSA"
.

Christian Meesters, 17 Mar 2026, 16:56:38 UTC

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