RAtYPP0Z0n (explore)

RAtYPP0Z0n

https://w3id.org/sciencelive/np/RAtYPP0Z0nsACz8KP0sIHBvrnXf8390hliiM-GtrdLgyE

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📌 Nanopublication

CellProfiler tracker recovers coherent atmospheric-river tracks cross-discipline FORRT-Replication-Outcome comment... approve/disapprove... edit as derived nanopublication... create new with same template...

This is a local identifier minted within the nanopublication. https://w3id.org/sciencelive/n...llprofiler-ar-tracking-outcome

cellprofiler-ar-tracking-outcome

http://www.w3.org/1999/02/22-rdf-syntax-ns#type is a https://w3id.org/sciencelive/o/terms/FORRT-Replication-Outcome FORRT Replication Outcome .

This is a local identifier minted within the nanopublication. https://w3id.org/sciencelive/n...llprofiler-ar-tracking-outcome

cellprofiler-ar-tracking-outcome

http://www.w3.org/2000/01/rdf-schema#label has the label (this is a literal)

"CellProfiler tracker recovers coherent atmospheric-river tracks cross-discipline"

This is a local identifier minted within the nanopublication. https://w3id.org/sciencelive/n...llprofiler-ar-tracking-outcome

cellprofiler-ar-tracking-outcome

https://w3id.org/sciencelive/o/terms/isOutcomeOf is an outcome of https://w3id.org/sciencelive/n...cellprofiler-ar-tracking-study

cellprofiler-ar-tracking-study

This is a local identifier minted within the nanopublication. https://w3id.org/sciencelive/n...llprofiler-ar-tracking-outcome

cellprofiler-ar-tracking-outcome

https://w3id.org/sciencelive/o/terms/hasOutcomeRepository has the repository https://doi.org/10.5281/zenodo.20811614

doi:10.5281/zenodo.20811614

This is a local identifier minted within the nanopublication. https://w3id.org/sciencelive/n...llprofiler-ar-tracking-outcome

cellprofiler-ar-tracking-outcome

http://schema.org/endDate was completed on (this is a literal)

"2026-06-22"

(xsd:date) .

This is a local identifier minted within the nanopublication. https://w3id.org/sciencelive/n...llprofiler-ar-tracking-outcome

cellprofiler-ar-tracking-outcome

https://w3id.org/sciencelive/o/terms/hasValidationStatus has the validation status https://w3id.org/sciencelive/o/terms/Validated

validated

This is a local identifier minted within the nanopublication. https://w3id.org/sciencelive/n...llprofiler-ar-tracking-outcome

cellprofiler-ar-tracking-outcome

https://w3id.org/sciencelive/o/terms/hasConclusionDescription has the conclusion (this is a literal)

"he CellProfiler object-tracking pipeline (IdentifyPrimaryObjects + TrackObjects, Overlap method), built to follow dividing nuclei in fluorescence time-lapse and applied without modification, detects and tracks atmospheric rivers across an ERA5 IVT time-series. On the early-February 2017 North Pacific atmospheric-river sequence (6-hourly), it recovered five distinct AR tracks across the ten-day window and followed one persistent river for twenty-two consecutive 6-hourly steps (about five and a half days). The same Galaxy CellProfiler workflow runs end-to-end on Galaxy Europe (usegalaxy.eu) with all thirteen steps green — including the final Run CellProfiler pipeline runner — producing TrackObjects tracking measurements on a public history, demonstrating the cross-discipline method transfer executes in the Galaxy environment. The bioimaging "track many bright objects, including ones that divide" behaviour therefore carries over to Earth-system object tracking."

This is a local identifier minted within the nanopublication. https://w3id.org/sciencelive/n...llprofiler-ar-tracking-outcome

cellprofiler-ar-tracking-outcome

https://w3id.org/sciencelive/o/terms/hasEvidenceDescription has the evidence (this is a literal)

"ERA5 IVT, North Pacific (15-60N, 170-250E), 2017-02-02 to 2017-02-11, 6-hourly, ARCO-ERA5 (anonymous). Detection used the Guan & Waliser (2015) criteria (IVT > 250, length > 2000 km, length/width > 2, poleward flux > 50). Local same-algorithm path (results/track_summary.json): 5 AR tracks; mean 1.33 ARs per detected frame; longest track = 22 frames (about 5.5 days); maximum AR length = 9,559 km; peak IVT in window = 1,625 kg m^-1 s^-1. Per-object tracks (frame, time, track_id, centroid, length_km, IVT, poleward) are in results/tracks.csv; the headline montage + recovered trajectories are in figures/main_result.png and the ARs-per-timestep + peak-IVT plot in figures/robustness.png. Galaxy Europe verification (live, 2026-06-23): workflow/main_workflow.ga — rebuilt from the GTN tutorial's own workflow (gxy.io/GTN:T00516) and retargeted to the IVT frames — runs end-to-end with all 13 steps green, including the final Run CellProfiler pipeline runner; the run produced TrackObjects tracking tables (93 object-instances across the series, 11 TrackObjects columns incl. displacement, distance-travelled, lifetime, trajectory) and tracked PNGs on a public history (https://usegalaxy.eu/histories/view?id=11ac94870d0bb33ad591597e3e548295). The Galaxy run uses the tutorial's default CellProfiler parameters; the quantitative AR characterisation above (Guan & Waliser criteria) is the byte-comparable local same-algorithm path. Github repository: https://github.com/annefou/fiesta-galaxy-cellprofiler-eo"

This is a local identifier minted within the nanopublication. https://w3id.org/sciencelive/n...llprofiler-ar-tracking-outcome

cellprofiler-ar-tracking-outcome

https://w3id.org/sciencelive/o/terms/hasConfidenceLevel has the confidence level https://w3id.org/sciencelive/o/terms/Moderate

moderate

This is a local identifier minted within the nanopublication. https://w3id.org/sciencelive/n...llprofiler-ar-tracking-outcome

cellprofiler-ar-tracking-outcome

https://w3id.org/sciencelive/o/terms/hasLimitationsDescription has the limitations (this is a literal)

"This establishes feasibility of cross-discipline method transfer, not detection accuracy: the recovered ARs are not benchmarked against an independent reference catalog (e.g. tARget/ARTMIP), so agreement with community AR databases is not quantified here. A single basin and a single multi-day event were analysed, with one fixed IVT threshold (250 kg m^-1 s^-1) rather than the percentile-based threshold used in some catalogs. The Galaxy run executes end-to-end but uses the tutorial's default CellProfiler parameters (object size and threshold inherited from gxy.io/GTN:T00516), so its tracked objects are not filtered by the AR-specific geometric and physical criteria; the quantitative AR tracks reported here are from the byte-comparable local same-algorithm path, which applies the full Guan & Waliser criteria."

This is the identifier for the assertion of this nanopublication. https://w3id.org/sciencelive/np/RAtYPP0Z0n.../assertion The assertion above http://www.w3.org/ns/prov#wasAttributedTo

wasAttributedTo

https://orcid.org/0000-0002-1784-2920

Anne Fouilloux

https://orcid.org/0000-0002-1784-2920

Anne Fouilloux

http://xmlns.com/foaf/0.1/name has the name (this is a literal)

"Anne Fouilloux"

This is the identifier for this whole nanopublication. https://w3id.org/sciencelive/np/RAtYPP0Z0n... This nanopublication http://www.w3.org/2000/01/rdf-schema#label has the label (this is a literal)

"CellProfiler tracker recovers coherent atmospheric-river tracks cross-discipline"

This is the identifier for this whole nanopublication. https://w3id.org/sciencelive/np/RAtYPP0Z0n... This nanopublication date and time when the nanopublication was created http://purl.org/dc/terms/created was created on (this is a literal)

"2026-06-23T10:20:36.207Z"

(xsd:dateTime) .

This is the identifier for this whole nanopublication. https://w3id.org/sciencelive/np/RAtYPP0Z0n... This nanopublication links to the assertion template that was used to create this nanopublication https://w3id.org/np/o/ntemplate/wasCreatedFromTemplate was created from the assertion template https://w3id.org/np/RA2zljn0Nw...

RA2zljn0Nw

This is the identifier for this whole nanopublication. https://w3id.org/sciencelive/np/RAtYPP0Z0n... This nanopublication the nanopublication consists of an introduction of the given resource http://purl.org/nanopub/x/introduces introduces This is a local identifier minted within the nanopublication. https://w3id.org/sciencelive/n...llprofiler-ar-tracking-outcome

cellprofiler-ar-tracking-outcome

This is a local identifier minted within the nanopublication. https://w3id.org/sciencelive/np/RAtYPP0Z0n.../sig

sig

http://purl.org/nanopub/x/hasSignatureTarget has as target This is the identifier for this whole nanopublication. https://w3id.org/sciencelive/np/RAtYPP0Z0n... this nanopublication .

This is a local identifier minted within the nanopublication. https://w3id.org/sciencelive/np/RAtYPP0Z0n.../sig

sig

http://purl.org/nanopub/x/hasAlgorithm has the algorithm (this is a literal)

"RSA"

This is a local identifier minted within the nanopublication. https://w3id.org/sciencelive/np/RAtYPP0Z0n.../sig

sig

http://purl.org/nanopub/x/hasPublicKey has the public key (this is a literal)

"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"

This is a local identifier minted within the nanopublication. https://w3id.org/sciencelive/np/RAtYPP0Z0n.../sig

sig

http://purl.org/nanopub/x/hasSignature has the signature (this is a literal)

"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"

This is a local identifier minted within the nanopublication. https://w3id.org/sciencelive/np/RAtYPP0Z0n.../sig

sig

http://purl.org/nanopub/x/signedBy is signed by https://orcid.org/0000-0002-1784-2920

Anne Fouilloux

This is the identifier for this whole nanopublication. https://w3id.org/sciencelive/np/RAtYPP0Z0n... This nanopublication http://purl.org/nanopub/x/wasCreatedAt was created at https://platform.sciencelive4all.org

platform.sciencelive4all.org

This is the identifier for this whole nanopublication. https://w3id.org/sciencelive/np/RAtYPP0Z0n...

this nanopublication

http://purl.org/dc/terms/creator

creator

https://orcid.org/0000-0002-1784-2920

Anne Fouilloux

This is the identifier for this whole nanopublication. https://w3id.org/sciencelive/np/RAtYPP0Z0n...

this nanopublication

http://purl.org/dc/terms/license

license

https://creativecommons.org/licenses/by/4.0/

4.0

Anne Fouilloux, 23 Jun 2026, 10:20:36 UTC

Raw formats

Full nanopublication: TriG(txt), JSON-LD(txt), N-Quads(txt), XML(txt)

Assertions only: Turtle(txt), JSON-LD(txt), N-Triples(txt), RDF/XML(txt)